CoVDB Coronavirus Database (v3)   
Strain
Decapod_KX947267 (Region: China;  Strain: Yellow head virus isolate 20120706, complete genome.;  Date: 6-Jul-12)
Gene
replicase polyprotein 1a
Description
Annotated in NCBI,  replicase polyprotein 1a
Location
KX947267(+):70-12282
GenBank Accession
AQS27935.1
 

Sequence

CDS
ATGGAGCCTCTTCAGGTTCTATTGTTGTTGGCAACATTCCTCAGTCTCCTCCTATTGCTTAGGATCCTAGACCGCGGTACGCATGTTCTGTCGGCCGTCAGATTGACTCTCAGGACCACTTTCTTCAATGAAAGTGCACGAAACCCGCTCGTATGGACCAGCCCCGCCGAATGGTTCAATTCATCCGGCAAGACTATTCCCAGAATGGACAAACGCAGATGTCGAAGTGTGAAACACGGATCGCCATATCCCTCTGATATCACACTCACCATCCTCGCCAACGATGCTTATGATGCTCGTGCTTTCTACCGCAGCAATCAACACGCCACGCAAGCCATACTCTGGCTTGGTGCCCTCTTCAATGCGGGACAGGTGTTGTGCGGGATCGCGCTTTCATTATTTGCTCTGACCTACATCATGGCTGCCAAGTTGACAGCCAGCCTAAGGAAATTCCTTCAGGCCGTAGGTGCGACCCTATCATCAGAAAACTCATGCAGTCACCAAGAGAAAACCCACGTTCTGAAAAATTCTGTTCGGTCTTCAATGATCAACTTGCAGGATTTAGTAAGACGTGTTGGCCCTCTCCTCCCAATTGTCACAATCATGTGTTGCATCCCCGCCACCGACGCATCCGAGATCACAATTGCCCCTCGTGTCACTCTTGATACTGGGCTTTCTGCCGTCTCTCTGCTCATCACTGCAACCTGGTTGATCAAACAATTCCAATCATCACAAGTACGTTCAACAAAAATGAATTCCTCCTTCGGAACCGCCACAGGACTGCTCATCATCACACTCCTAACATGCATCACGATTGTAAGTGGAATCCCTGCAGCGACCCCTAACCTAGCCAAAATTGGTCATGGTATGGTTGCTCCCTTCCTCCTCTTCATCGTCATGTGGCTCACCCTCCGCTATGTACTCACCCTCTTCATCCGTCTATTTCCGAAACAACTTCTCAAGTTCTACACCTCTAACGATCTTCATCTGTATTTCCTATTCTCCTATCAACATCATCTTCCTGATGTGCCTCTCAAGAAAGCTATCATCTCAAACGGTGCCTACACTGATCACCAGCACACAACCACAAAGTTCTGTAACAGTTGTGTTGGATATGGTCACACTGACTCCGAATGTCTTGACTACACTCACCCCGTCTTCAGCTACAAACGATACTACAACATTGCTACACAAAAGACAATCGAGGCTTACCTTGAAGTACACCCACAGAATGAAATCTTCACATACAACGATACAGTCATCATCCGTGGCGACCTCGTCTTCATCAACAGAACGTTGAAAGATTACGATCACACCACCCTTGGTTCACTACATCCCGAGGATTTCCCACATCTGTCCGTCAGACGCGTTACCTACAACCCAGTAGTTAACGTAGATGGTACGATCAGGATCTTCCCTAACACCAAATACTACAATCACACAGAGTACACACTTGACAGCGAATCAGACATCGACACTGCTCACTATCAGACAATTTACAGACAGACAACACCTTTCAAGATTGGCTACGACATCCCTTGCGGCATCATCCCACACGCGGACACAACAATCGTCCACGCCCAAGGATACCTCAATGGCCAAATCGAGATCGACACTTCTTCTGCCGCCTCTAATTTCTCCAACATCTCTCTTCGCCCTAGCACTACTACATATTCCTGCTCACAAGCTTCCTCTGCTACTTCTCAAACCGGCTCAATCACTTCACAATCTTCATCTATCTCTGCAAGCTCCGCCAACTCTCTCGCTCAGAAATCAACACGCGACCAGACATTTGACTACATGATAATGAGACCGAAACGCATCTACAATCCCAACAACGACATTCTCACTGGTCTTCCCACCACCACTCGCACAAATGCTCAAGGCGACGCCAATTACCCTGTCGAACTGCAATACGCATTCCCAGGCTGGACCGCTAACGAGATCATTAATGACGAAGATGGCATCAAACCACACGAATACGTAGATTGCAAACAAGAAACAAAGGACTTCCTCAACACGCTTGCTCCACAGAAATTCAGTACACTCGTCAACACACCAGGCACACCCTCATTCGTTACACTACACAACGCCTGTATCTGGGACACCAACGACCCCATCATCGACATCGGCATCGCAAGTGCCACTCGTCCCGATGGTGTAAGTCAACGTATCCCAGACATGGCCAACGCATACAACGTCCCACCCCCTGCACGACGTCTCGGCTCATACACAAAATCTGGCCGTGTCTTCTGCATCTGGGCTGCACGTGTAAACTCTGCTCCAACACCATGCAAACATGTAAACTCATGCAACTGTCTCGACACAAAATACCACCGATACAATGGATTCTACAATGCCGTCTCCAAAATCATCACACGCGAACAACTCACATCAATCTCAATGTCACTCAACGTTGGATGTGGTCCTCTCCAAGGTGACTGGAGCACATACGAAGAAATCATCTTCCGTATCGCTCGAGAAACACAATGCTACTTCAAGATCTACATGAACAACGAAACCGGTGCTCAACACAACCCACTCACAAACCAGACAGGCAAGAATCGTAAGAAATGGCACGTATACAACGTACAAGAAACCAAGCTGCCGATCAACAAGACCCTCCGCTCTGTCAACGTCTCACAAGCACAAAGACGGCGTGAACAAAATCGACCCCTCCTCTCTGCTGACACTCTTCCGACTCCTCCCAACCGCATTCGACCTGCATTTGACGAGGAACCTAAGAACTTCAGAGAACACTGCCAACTTTTCTACAAACAAAGACACTCTCAGCTCCAAAATCTTTTCTCTCTCCTCCTCGGCATCGCCATCCACCAATTCATTTACGATGTTTTGCATGGACTCCGCGTTATCGACCACACAGAAATCTTTTTCACAAGCTTCATCTTTGCCACCACCGCCATCACTATGCACAACTTCAAGATCACCAGCATTCCAGCAACCCTTGCCGGAGTTCTCGTTGGCGATAACCCAATCACCTGGTTCTGTTTCCTCATTGCTCATCGATGCAATTCACGATTCAGCCTCCAGATCCTCGGTATCCTCAACGCCATCAATCCTTACAGTGCATACACTGGAACAATCTGCCTCATCCTCTACACACTCACCCCCTCTACTTGCACCTCTCTCACACGCTGCATTCTCACTCTCCTGCTCGGCGCTACCGGCGCACACGCACAAGAAACAGAACAGACATCAGACGCAAAATACTTTGCTCAGTTCACCCGCCTCATCGTCTACGCTCTCTGCGCCCACATCATCTACACAATTGTCAAGATGCTTGAACCGCGCGAAGAACTCGAGATTGTCACCGAAAGCACAACACAGTCATCAAACTTCAGATCAACACGACGTTCAACACATACACAAGCATACACTAGACCTACAACGGCCGCAGTTGTTATTGTGGTTGCCCTCACCTTCACTCTGATCGTCAGTACTGCCAGTGCTAATCAGGTCTTCTCTCGCGATCCCTCTCACAAATTCTACTCTTATCTTGAACCTATCGAAAGCTGCGACAACCCATCCTACATCGGACAGATCGACTATGATAGATTCTGGAAGATGCCAAGCACATTCCAATTTCCCAACGGCATGACGCTCGAGGATTACCTAATGGAAGAAGTCTGTTACGACGAATCCATTCTGGACCTCCTGCACCCTGTCTACGTGATTGACGGAATTAACCTTGAAGTCACCCAGGCTATCAGTTGCGATCATCATCTCAGTGTCAACAAAACCCAACTCTCCTATTGTCTCGAAGAACGAGTCAGTGAAAAGGACATGACACTAATGACCCAGGCACAGCTCAAGAAATTCGCCCTCAAGTACAAGCGACGCGCAGATGAAAATAACACAGTTTCACACACAGTCCAAACAGTAAACATTGTAGGCATCACACTGACATACAGATCCAATTACACATACACACTCCCATACGGTTCACTCACTTGCAACTCAGAACACGCATACTGCTCATACATGGCCAAGGTCCTCGGATCTACACACACACTCCCAGCCAGCGCCTTACAGTATTGCCACGGTAACGAGGAATTCTGTGAATACAAGCGCTTCGACGACTCCGATCTCTGCACACTCTACTACCGTGATCTCACAATTGCTCCGGACACTGACCCCGAGGACTTCAAACTCGCTCAGCAGTTCCGCGAACATGTGGCATCACTCTGTGGAATCCGTGCAAACTTCCACGACGCGCACCTCACCGAACCCAAGTCAACACCCAAGAGCCGACGTGGTGAATGGTACTCTTCCACCCTCCGTATCGCTAATCACCGCTCACGCAATGGGCAATGCATTGTCAACGTCTGTGGCTCGGTCCCAACCGATTTCACAGATCAAGGCATCGACTTCGAATTCCAATCCGTCAACGACTGCACTCCATCAAACACCACCGCAGACTGCGTTGCTATTGACTTCGCATATGAGTTCGCATACAGCTACATCCACAAGAAGGTTATGCACGATGGTCACGTCCCCTACATCAGTCGGATCGTGAACCTCATCCCAGGCATTCCTGAAGCTTACACGCGACTCGCCGCTGTCTACAATGCTGTGGTCAACATTCCCTCTGAAGAAATTGTTGATAGATTGTACGAACAGATTGACAACACAGCCCAGCTTGCCACCCGCCGCCTAGAGAACATCAAATACGTTCCGCAGGTCGCCAAAATGACTGCTGAGGTACTGTTCGCTGATCGCATTGTCAAGAGATACACACTCGTCGGTATCAAAACACTTTGCTTAGCCAGATTCGAAAAATCGGTGTGCAAGAAATTGATTATCGCCGTCAATGGGTTCATCAACAACGATCACCTCATCATCGAAACAGACTTTGACAAATCCACATTCACCGCACTCTATCACTTCATCACGAAACACTACAAGGCTAAGTACACCGCTCCTCAACCTGTGTGCAAATCGCCTAGCCGCATGACACCAACACAACGCTACATCAATGACTGTGACATCCAACTCGAACTGAAACGTCGTAACATCAACTTCGTCGAAGGCCAAGTGGATTATTCGCGCACAAATATCACAATCCTCCACAACGTCCCGAAAAGTCAGATCAACGTCATCTTCACCCCCACCGGCACAGAATACTACGACTCCAACGATCATCAGCTCGCAACAATCACTGACAAGCGTTTCATTGTAAACGGAACAACATACACACTCCCATCTGATCTCTATCTCACCGCACAAGGAAAGAACAAGCAGAGCAGACACTGGCATAACTACGGACATCGCTTTTACAACGCTGAACTCATAAAACCCGGCACCAACCGTGGCCATATGATTCCATCGTTCCTAGGCGGTCCCGCAGTCTATGCCAATGCCTTCTTGCAGACAATCCAAGCTAACCTTGATGACACACCCTTCGAAAATCAAGCAATCGGTGTCGTGTACAACAAGCACATCACAAGCTACAACCCAAATGACATCATCATCGGGGATGCTTCTGATCCTTGGTGCCACATCAACCCTTCAACACAGGAAACACCAACTCTTCCACTTCCATCTGATGTAAGTGAAGCTGAGACATTCATCCTCACACACGGTAACATATTCACAGTCACACACGACCATCCTTACCACACCGAAGACGAGTTCAAACTCATCCGCTCCCTCGCCCTCCCTTGCGGCGTCTATTCTTACACCGTCAGCCTCAGTGGTGAAGTCGTTCGTCGATGGAACCCATCTGATCAGACCGGTGGTAAGACTCTCCTCCATCATCCTGTCAACACTACACACATCAGGACATGGGAACTCACTACAACCTCACTAAAAACCACCCTCAACACTATCGCGAAACTCCGACACCCCGTCCTCCAAACCCTTGGATTGGAATCGGATCTCATCGCCAGTGCACACCCGCTACACATCCGAAACACTCTCGGCTCACTGTACACATTCAAACACCTCGCATACCTTCTCCCCGTTGCCCTCCGCTGTGCCTCTGGTGTCGCCGTCAATTTCGGAATTAACCCTCCGCTATCAAACTGCACTCTAGACAACGGCTACGGCATCGAACAATCTGGTCTCCCTTCTCTTGAACACAGCACCCAGAATTTCACCGCACTCAACACCAACATCCCCACTACATACACACTGAGTGGCGACATCCGTGACATGACCTGCCTCTACAACGCAATCAGACTATGGGCTGACGCTAACGACTACACCACATCATTCACCGACACCGCAGACATCACATTCAAATTCGATAACTCTGCCCTGCCAACACGCTGCTACAACTACATCATCCCAGCTACACATGCATGTGACAGTTCAACATACGAAATTCCAGCCGAAGATCTCACCTACTTCCAACAGGCATCCCTCGCAATCATCTGCAAAGAGCATTCCAACATGTATTGCCATCAGCTCAACCTCGAAAGCTATCCACGGCCAACGTACTCAGAGTTCATGGACAATCTGCTCAACCTGACTTGCGGAATCTTCAACGCCACCGAACCAGTCCTTCGCTGCACAACAGAATACCAGATCATTCAAACTCCTCCACAGGTATACAACACCACACTCGAACAATTCACAGACGCTAAATTACACTGTCCAATTTACATCGAGCCCACTCCTGGAATCATGAACTCTAGCCTCGGCGTATACACATACAGCTACGAGAACAGAGTAATTGGATCTAGTGAGAGCATCTCTACACGTCTTCCTTCCGACATTCTCATCCTATACAAGAACATCACCGAAGTAAAACACAACACAGACACGCAGCTTTGCCAATCCGAGGGGAACAATACCCTGTTCCACAACGGTTGCAATCTCAAGATTACTCACGGCACACCTTCAGCACCAGTTTACACCACATATCCAGACAGACATCACGACATCATCCAAGTCCAACTGACACAGGATATCCTAAACACGCTCGTCAACGCCACCGGTAGCTTGAACATCATGAAATACCGACGCTCCACACTCAACATCACATTCCCACACCATCCCATCGACATCACCATCGAACAGATTGACGGTTGCCACGTGATTGATGAAACAGCTCTCGAACAGTACAATCGTGACTACCAAATAGTCTACGAGTATCCTGATCTCGACGGTCTTCTTGAAATCACCGTACCAAACAACTTCGCAAAGGAGAAATTCTATCGCGAAGCCCTCGGCCACTGCTACCAGCTCCGGTTCATCTACACAGATAAAGTCATCAACGTAGAACCTGACCACACTGTCAACAACTGTCTCTATCTCACAAAAATCGCAGACATTCAAGTTTCAGGGAGCTTCTGTAACTACCTTCTTCCATTCAAGCTCTACACTACACCAAGTGAAAGATGTCACAACTATGTCAGCAATCTCATGGAAATCTATGGCGTCCGCGGAGTCGATCTCCCGTTCGGATTCCTGGATAAAGTGGAATGCACAAACATCGAAGACACCAAGATCGAAATCATCAGCGACAAATGGGGTAATAACACCTACATCCATCCTGGCGCTGCACGTGACACATGGGGCCACAACGTCGTCATGAATGAATACACAACCGAAGGGGAGTTGATCAAGTCTCAAATCTACAACCAGTCTTATTTCAACTTCCTCGGCGGCCGTGTTCACCGTGACAACACGTATTGCCTCGCTCGACCTTACGAAACAACGTCTGTATACATCGAACCCATCTGTTCATCCAGTTCATCAACACGTTGGTCTCTCATCTACAACATCCCAATCACATATTTCAGACACGCACAAACATCATACTATGACACCCTCGATCATTCCTCTATCTACAGTCTCATGATCATCATCGTCTCATACTACCTCCTCACGCGCCTCTTCGAACCTGTAACTGTTTGTTTCATCTACATTCTAATCACAAATGTCTTTGCACTCATCATCTATCAGGCCCGAGATCTCGCGTTCATCAGCAGTATCATCTCAGTGCTCTTCGGAACTCTAACAGAAATCCTCAAGCGCTGCATGGTCATCCCCACTGTCCTCTCTTTCCTCTTCACCATGACTTCTTACTGTAAGAAGGGCTCCATGATGAAGCGTCCACGTGATCACCTCGACATGTTCGTCGCAACATCATTCATGGCTTTCTCTCTCATCAACATTGGCTACATCTTCCTCCTCACTGGAATCGTAATCTTCATCGGCTTGTACAAACTCATCTCTGCACAATTCACACAACCGCATTGGCGTACGTATGTTAACGTGTCAGTCGGAATTGAAGACATCGCTGTCCTAGGTTACACCCAGACCAATCAGGTTAGAAAGGCAGCCGATGAGCTCATGAAGAAATCAACTGACGACAAGTACAACTACTACCAACAACTAGACGCCTTCGTGCACGCCGCATTCCTCAATGCATATGCTCAAGCAATCGATTCCAAAATCCCTCTCAACTTCACTCACCGCAACCTCAACTTCCGCGTCTCCCAGCCCAAGGCAAACTTCCTTGTCGGCCTCGTCACTCATGAGGTTAACACAGGTAACGCCACAAAGGTTGAAGACCTCCACAAACACCCATACAACAGATACCGCAATAACATCGTGCGCGTATATGGTGAACGTGGTGATCTTAACGGTTTCCTCAGCGGTAAGTTCCTCTACTTTCCTAGACACGTCTTCGACTCATGCACAGATAACACACGCACACGCTACATCCGCGTCACAAAAGGTGAAGAAACTCATGACATCGAGATGTTGGGCGAAGAATACGAGGCCACACCATTCATCAAGGTTGAGAGCCCATTCGAAGAAGCTATCGAGCTCAAATTCGCTACACTCAAACAGACACAGTACGCCTACTTCGTCACCGCCGATGACATCAGGATTGGTTCCATGTCCGTCGACGGCTATCACAACATTTCTACCAAGGATGGTGATTGTGGATCACTCCTCTTTGACCACCTTCATAATGTTGTTGGTGCCCATATCGTCGGCATTGCTAGCACTCCTCCTGTTAACGGCGCCCTGACCTGGAACGCTGAAAAAGAAATGCTCTGCGGCCCCAATGACGATTACGACTTTGATCCATCTAAAGTCGAGATCCCAAAGGTCTGGCCCGTCGAGACAATCACTGCTCTCAGCACAATCCTCAACCAGCTCAACTATGTCACCGGTGACGCGTTCACAACTCCAAAACTGCCAACAAACTACCATCTCATTGGTTGTGCAACACTGGACCAATACGTCAATGCCCGTAATCTCGTAACCGGCCAATTCCCTCAAATCAAGGAGGCACTCGACGATTTCATCAATGGATACGTCGCCAACATGCAACGAGGGACTGAAGCCTACAACGTGATCTACACAAGCATGAACGCTCAAGTCCGAATCGCTGACCTCTCTCCTCTCAGCAGCTCAATCACCAATTGGCAATACCTTGTCGACCCACTCCTTCGCTTCCGATGCTTCATCTTCTCATTAGTCAAGCAGTACATCCGACACCTCGTCATCTACCTTCTCCTCCAACTAGCCTTCATCTGCTTTGATCACGGCTTCTTCTTCAAGGTACTACGAGACCCAACCCATTTCCTCTTCACAATCCTCAGCACTGTTTTCGTTTCTATCAGCCCCACTGCTAGCACGAATAACATCCTCTTCAAGTATCTGCTCAGCTACACGGTTGAATACAGATTCGCATACCTCAACGTCGAAACTCTCATCAAATCATACCTCTATCTCAGTTCTCGCGAAGCAATCTTCTACACATCTCGTAGGGTTAACAAGCTCTGCACCCTCTTCACTGTCATAGCCATGATCATCATCGACACCTTCTTCGTTGAAATCGGTGGACAAAACGTTCTCCCCGTGCTCATCCTCTGTATTCCTATCTTCTACCTTCGTACTGTAATGATGGGATCTGCCCAGGTTCAAGTGTATTTCGAAGCTGATTTGCACAAACCTACTGCAAATTTCATGACTCTCATTTACTTCTTGATCATCAACGCTCTCTCCATTATCATTTACTGCTGGGGCCTCTTCTCATTCAACCCATATGCCAACAACATCCTATTCGCCACAACCATTGTCCACTTCATTGCATTCTATGTTCTCTCTCAGGAGGTTCAAAAGGTGTTCGAAGCCAACACATTCCGTGTTCCAAGGCTGGTATATGCTGTTATCTCCTACATCTCTCACGTTCTTTGCCACATCTACTCAGAGATGCTTAACAAGGTATGCGAATGGATCCTTCGGGCTCTCATCAACGCTAACCGCGCAGCACTCTTCGGTGGATTCTTCGGCATCTTCCTTCTCATCTGTTTCCTCTGTTACTACTTCCTCAAGAATCGCTCAACAGTCAAACATGAATCAAACGACATCTCAGAAGCACACACACACTTTGACTCATTCGCCAAACTCACTACACTCATCGCCAACAATCCCAAACTTGCTTGCATGAAACCGTTCTGCGTTGACTACAATGACAATCGTGCGCGTATGACCCTCAAAGAAAAAGGTAACTGGGTTGTCAAGGTGCGCGACGCTCTCCTCACTCAATTCAGCCTAACTAATCCGGCTGATTTAGCAGAAGTGATCCACGAGTGCGCCAGTCATCCGACTCTGAACAAACTATTCTTCGACAGCTCAAGAGGTCTGCAGGTCTACCATGAGATCGACTCCAAGCTCGATCAAGCCCCGTATACCGGTGATAACGATCAGATCAAATCCGATACTGCCGTTCTTGCCGAATACAGGAATGAACTCAGCCTCATTGAATGGAAGGTAGTCACCTTACAAAAGGAACTCTCAGAAGCAAAATCCGCAGAAGACAAAGACAAGATCAAAGGGATCAACACACAACTCGCTGACCTAATGAAGCAGCGCAAAACACTCACCACACTCTCAAACACACTGAACCAGTCAATCATGGCTAGAGATGCCAAGGAACGCCGTAACGCCAGACGCCAAAACAACGAAGAAGCAAATGAAATTGCTCGCGTAATCAAGGCTCAACGACTCCGTGACTCTCTTACCCTCATCTTCAACACATTCATCAACAATCTCATTAAACTGACATCCGACTGCAATGCGCTGAAATCATACGCTGACAACGTTCTCAAGTATGTGCCCGAAGAAACAAAGGACTTCCTCAAACGTTCTGACAACTGCTACCGCCTCTCTCAGGACATGATCCTCATTGAAACACCTGCCAGTCCTCTATCCTACTTCAAGGAAAAGAACGGCATCATCGAGGTCATCAACTCCTGCAGCTATGACACCTTCAAAGACGGCATGGTTGTTAATCACATCCTCGACGGCACTACCAAACTCCCCTACACCCTCGACTCACTCAAGTCATCTACACATGTGGTTTGTTATGAACCAGACACCTCATCCGGCTACACACACACACATGACAACACTTGCAGACACGAAGCCAATGCCAAGGTCGGACAAACCCTACCATGCGGCACAGCTCTCGAATGCAACCACCAACACTACCACAACCAATTCGATTGCACTTCTGGTTACTTTGCTTTCATGGCACAGCACATCACAGAGTGTGAGACATGCCTCGACACCTTCAAGCGTGGACACTGTGGCTGCGGATACCGATACAAGGTTCCCCGCGTCCTCCAGTCGTTCATCCTCCACGGATCGAAATGTTCTCACGTCACCCACGAACTCAGCTACTCTGGCACCGCCGCAGCCTTCAAACCATACTATGATGAAGCTACAAACGGTATCATGTACAAGTCCGCCGTGATCGCATACCTCACCAAACCAGACAACTACACAAGTACATTCACCTACAACAATGAAACATACTATCTTCCCGTCCCTCTCACTCACGACATCGTCTCCATCCTCATCGCTTTCGCTACGCGCAATGGCTCAATTCCCGTTGGCGAAGTACAGTTCGAAGCCTGCTTTGACCGAGTTGACGCCGACGAAGAAAGTAATCTCCAATCTTACTCTCTCACCGACACCCCATGTGCTGATGAAGACCAGATTTGCTACAAGATCCTCGAGTGCCCATACCATAAAACCAAGGATGGCCGCTGCATGATCTGCGCTAATCTAGATGACGGCATCTACACCGTTGTCCCCGCACAATCATCAAACCATGAGCTAGCGAAAGAACTCTCCATCACTCTCACCAATGCCAAAAACCCTCCCCAAAAGAAGCATGAGGCAAATTTTCAGACAAAGCCTCGTCGAGTCTTCCAGTAA
Protein
MEPLQVLLLLATFLSLLLLLRILDRGTHVLSAVRLTLRTTFFNESARNPLVWTSPAEWFNSSGKTIPRMDKRRCRSVKHGSPYPSDITLTILANDAYDARAFYRSNQHATQAILWLGALFNAGQVLCGIALSLFALTYIMAAKLTASLRKFLQAVGATLSSENSCSHQEKTHVLKNSVRSSMINLQDLVRRVGPLLPIVTIMCCIPATDASEITIAPRVTLDTGLSAVSLLITATWLIKQFQSSQVRSTKMNSSFGTATGLLIITLLTCITIVSGIPAATPNLAKIGHGMVAPFLLFIVMWLTLRYVLTLFIRLFPKQLLKFYTSNDLHLYFLFSYQHHLPDVPLKKAIISNGAYTDHQHTTTKFCNSCVGYGHTDSECLDYTHPVFSYKRYYNIATQKTIEAYLEVHPQNEIFTYNDTVIIRGDLVFINRTLKDYDHTTLGSLHPEDFPHLSVRRVTYNPVVNVDGTIRIFPNTKYYNHTEYTLDSESDIDTAHYQTIYRQTTPFKIGYDIPCGIIPHADTTIVHAQGYLNGQIEIDTSSAASNFSNISLRPSTTTYSCSQASSATSQTGSITSQSSSISASSANSLAQKSTRDQTFDYMIMRPKRIYNPNNDILTGLPTTTRTNAQGDANYPVELQYAFPGWTANEIINDEDGIKPHEYVDCKQETKDFLNTLAPQKFSTLVNTPGTPSFVTLHNACIWDTNDPIIDIGIASATRPDGVSQRIPDMANAYNVPPPARRLGSYTKSGRVFCIWAARVNSAPTPCKHVNSCNCLDTKYHRYNGFYNAVSKIITREQLTSISMSLNVGCGPLQGDWSTYEEIIFRIARETQCYFKIYMNNETGAQHNPLTNQTGKNRKKWHVYNVQETKLPINKTLRSVNVSQAQRRREQNRPLLSADTLPTPPNRIRPAFDEEPKNFREHCQLFYKQRHSQLQNLFSLLLGIAIHQFIYDVLHGLRVIDHTEIFFTSFIFATTAITMHNFKITSIPATLAGVLVGDNPITWFCFLIAHRCNSRFSLQILGILNAINPYSAYTGTICLILYTLTPSTCTSLTRCILTLLLGATGAHAQETEQTSDAKYFAQFTRLIVYALCAHIIYTIVKMLEPREELEIVTESTTQSSNFRSTRRSTHTQAYTRPTTAAVVIVVALTFTLIVSTASANQVFSRDPSHKFYSYLEPIESCDNPSYIGQIDYDRFWKMPSTFQFPNGMTLEDYLMEEVCYDESILDLLHPVYVIDGINLEVTQAISCDHHLSVNKTQLSYCLEERVSEKDMTLMTQAQLKKFALKYKRRADENNTVSHTVQTVNIVGITLTYRSNYTYTLPYGSLTCNSEHAYCSYMAKVLGSTHTLPASALQYCHGNEEFCEYKRFDDSDLCTLYYRDLTIAPDTDPEDFKLAQQFREHVASLCGIRANFHDAHLTEPKSTPKSRRGEWYSSTLRIANHRSRNGQCIVNVCGSVPTDFTDQGIDFEFQSVNDCTPSNTTADCVAIDFAYEFAYSYIHKKVMHDGHVPYISRIVNLIPGIPEAYTRLAAVYNAVVNIPSEEIVDRLYEQIDNTAQLATRRLENIKYVPQVAKMTAEVLFADRIVKRYTLVGIKTLCLARFEKSVCKKLIIAVNGFINNDHLIIETDFDKSTFTALYHFITKHYKAKYTAPQPVCKSPSRMTPTQRYINDCDIQLELKRRNINFVEGQVDYSRTNITILHNVPKSQINVIFTPTGTEYYDSNDHQLATITDKRFIVNGTTYTLPSDLYLTAQGKNKQSRHWHNYGHRFYNAELIKPGTNRGHMIPSFLGGPAVYANAFLQTIQANLDDTPFENQAIGVVYNKHITSYNPNDIIIGDASDPWCHINPSTQETPTLPLPSDVSEAETFILTHGNIFTVTHDHPYHTEDEFKLIRSLALPCGVYSYTVSLSGEVVRRWNPSDQTGGKTLLHHPVNTTHIRTWELTTTSLKTTLNTIAKLRHPVLQTLGLESDLIASAHPLHIRNTLGSLYTFKHLAYLLPVALRCASGVAVNFGINPPLSNCTLDNGYGIEQSGLPSLEHSTQNFTALNTNIPTTYTLSGDIRDMTCLYNAIRLWADANDYTTSFTDTADITFKFDNSALPTRCYNYIIPATHACDSSTYEIPAEDLTYFQQASLAIICKEHSNMYCHQLNLESYPRPTYSEFMDNLLNLTCGIFNATEPVLRCTTEYQIIQTPPQVYNTTLEQFTDAKLHCPIYIEPTPGIMNSSLGVYTYSYENRVIGSSESISTRLPSDILILYKNITEVKHNTDTQLCQSEGNNTLFHNGCNLKITHGTPSAPVYTTYPDRHHDIIQVQLTQDILNTLVNATGSLNIMKYRRSTLNITFPHHPIDITIEQIDGCHVIDETALEQYNRDYQIVYEYPDLDGLLEITVPNNFAKEKFYREALGHCYQLRFIYTDKVINVEPDHTVNNCLYLTKIADIQVSGSFCNYLLPFKLYTTPSERCHNYVSNLMEIYGVRGVDLPFGFLDKVECTNIEDTKIEIISDKWGNNTYIHPGAARDTWGHNVVMNEYTTEGELIKSQIYNQSYFNFLGGRVHRDNTYCLARPYETTSVYIEPICSSSSSTRWSLIYNIPITYFRHAQTSYYDTLDHSSIYSLMIIIVSYYLLTRLFEPVTVCFIYILITNVFALIIYQARDLAFISSIISVLFGTLTEILKRCMVIPTVLSFLFTMTSYCKKGSMMKRPRDHLDMFVATSFMAFSLINIGYIFLLTGIVIFIGLYKLISAQFTQPHWRTYVNVSVGIEDIAVLGYTQTNQVRKAADELMKKSTDDKYNYYQQLDAFVHAAFLNAYAQAIDSKIPLNFTHRNLNFRVSQPKANFLVGLVTHEVNTGNATKVEDLHKHPYNRYRNNIVRVYGERGDLNGFLSGKFLYFPRHVFDSCTDNTRTRYIRVTKGEETHDIEMLGEEYEATPFIKVESPFEEAIELKFATLKQTQYAYFVTADDIRIGSMSVDGYHNISTKDGDCGSLLFDHLHNVVGAHIVGIASTPPVNGALTWNAEKEMLCGPNDDYDFDPSKVEIPKVWPVETITALSTILNQLNYVTGDAFTTPKLPTNYHLIGCATLDQYVNARNLVTGQFPQIKEALDDFINGYVANMQRGTEAYNVIYTSMNAQVRIADLSPLSSSITNWQYLVDPLLRFRCFIFSLVKQYIRHLVIYLLLQLAFICFDHGFFFKVLRDPTHFLFTILSTVFVSISPTASTNNILFKYLLSYTVEYRFAYLNVETLIKSYLYLSSREAIFYTSRRVNKLCTLFTVIAMIIIDTFFVEIGGQNVLPVLILCIPIFYLRTVMMGSAQVQVYFEADLHKPTANFMTLIYFLIINALSIIIYCWGLFSFNPYANNILFATTIVHFIAFYVLSQEVQKVFEANTFRVPRLVYAVISYISHVLCHIYSEMLNKVCEWILRALINANRAALFGGFFGIFLLICFLCYYFLKNRSTVKHESNDISEAHTHFDSFAKLTTLIANNPKLACMKPFCVDYNDNRARMTLKEKGNWVVKVRDALLTQFSLTNPADLAEVIHECASHPTLNKLFFDSSRGLQVYHEIDSKLDQAPYTGDNDQIKSDTAVLAEYRNELSLIEWKVVTLQKELSEAKSAEDKDKIKGINTQLADLMKQRKTLTTLSNTLNQSIMARDAKERRNARRQNNEEANEIARVIKAQRLRDSLTLIFNTFINNLIKLTSDCNALKSYADNVLKYVPEETKDFLKRSDNCYRLSQDMILIETPASPLSYFKEKNGIIEVINSCSYDTFKDGMVVNHILDGTTKLPYTLDSLKSSTHVVCYEPDTSSGYTHTHDNTCRHEANAKVGQTLPCGTALECNHQHYHNQFDCTSGYFAFMAQHITECETCLDTFKRGHCGCGYRYKVPRVLQSFILHGSKCSHVTHELSYSGTAAAFKPYYDEATNGIMYKSAVIAYLTKPDNYTSTFTYNNETYYLPVPLTHDIVSILIAFATRNGSIPVGEVQFEACFDRVDADEESNLQSYSLTDTPCADEDQICYKILECPYHKTKDGRCMICANLDDGIYTVVPAQSSNHELAKELSITLTNAKNPPQKKHEANFQTKPRRVFQ

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
5LAK     E-value=0.016     Score=40.8     Identity=26.49%     Cov(Q)=3.71%     Cov(P)=48.09%
3D Structure

Ontologies

Subcellular Location

From MSLVP
Capsid

Topology

Length:
4070
Number of predicted TMHs:
20
Exp number of AAs in TMHs:
452.994639999998
Exp number, first 60 AAs:
18.90998
Total prob of N-in:
0.11792
POSSIBLE N-term signal
sequence
outside
1  -  3
TMhelix
4  -  23
inside
24  -  112
TMhelix
113  -  135
outside
136  -  254
TMhelix
255  -  277
inside
278  -  289
TMhelix
290  -  312
outside
313  -  984
TMhelix
985  -  1007
inside
1008  -  1018
TMhelix
1019  -  1041
outside
1042  -  1078
TMhelix
1079  -  1098
inside
1099  -  1138
TMhelix
1139  -  1161
outside
1162  -  2620
TMhelix
2621  -  2643
inside
2644  -  2647
TMhelix
2648  -  2665
outside
2666  -  2668
TMhelix
2669  -  2686
inside
2687  -  2706
TMhelix
2707  -  2729
outside
2730  -  3161
TMhelix
3162  -  3184
inside
3185  -  3190
TMhelix
3191  -  3213
outside
3214  -  3255
TMhelix
3256  -  3273
inside
3274  -  3279
TMhelix
3280  -  3298
outside
3299  -  3317
TMhelix
3318  -  3340
inside
3341  -  3344
TMhelix
3345  -  3364
outside
3365  -  3378
TMhelix
3379  -  3398
inside
3399  -  3418
TMhelix
3419  -  3441
outside
3442  -  4070
 
 
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