CoVDB Coronavirus Database (v3)   
Strain
Murine_KX964649 (Region: China;  Strain: Coronavirus AcCoV-JC34;  Date: 11-Oct)
Gene
spike protein
Description
Annotated in NCBI,  spike protein
Location
KX964649(+):20376-23756
GenBank Accession
AQW43023.1
 

Sequence

CDS
ATGGCTCTCATTTTTGTGCTTATGCTCATAACCCTCTATCGTTGCCCTTTTGTCCTGTGCAACTTTCAAGTTTGCACAGATCAATTACGCCAACAAGAGGTTTATCTACCTAATGCTGTATCAAATGCAACTTACATTGCTACTGCTGTGTTTCCAACTCGGCACTGGCACTGTGGGTCTTCATCTAATAGCACGCCAGGAGACAACAAGTTTAATGGCATAGGTGTTTTTGTGCATAGGTTTAATCATCCCAATTGGTGGCATTTTGCAGCCTATCCTGCAGCACCTACTAACAAGACTTGGATCTTGTTTTGGTGGCATAGGGCCACTCAAGCCAGCACGGTTTTCCAAGTTTGTAAGTACCAACAGCCTGCTGTTGATGTGCTTACTTCTGGTTTTAGGTGCGAAGCCCCCACAAACCCACCTTGTTCTGCTATTGTCAATATGGCCATAGAATGTTTGATCAACTCCACATTCAGACCCACAACATTTTCCTTTAGCTATGTCACGTGGTATAACAGTGAAATTAATGCTGTTATACATGGGCAGCGTTTTAGTTTTGTCTATGAAGGGTTTTTGTGGAGTAATGCGTCAGCATTTTGCTATGATGCAAATGGCTGTATTTTCAATATTCCCAACACTACATCAGATTGGCTAGTTTCCACTGATAGTAGTGGTGCTATAAACAATTTTGTAGATTGTGGTTTTGATTATGAGAGTCAGCTTAAGTGTAAGAATCTCGTCTTCGAACTAGAACCTGCAGTGTATCATGGCGCAGCACTCCCCATAGAGTCATCTGTTTATTATGTTGCAAACGACCTCGCAGATTGTGCGTTTTCGTTTGCAGACATATTTAGTGACGGTACAGGCAATTATGGTGGTCTGCGTAGGCATGTTTTTACAAATTGCTGGGTTAATTATACATCATGGTTTTTGTGTGATGATGGTCTTGCCTGCATTATATTTAATGCAATCTTTTCAGAGGTTGTATATAATCTAACACAACCTGATGGTCTAATCAACCCTTTTCTTAGGTGTAATGGTCTTGATGTTTACACAATTGTTAAGGGTTGCAGTGCAGGGTACGTTTTAAGGTACCAGCTATTTGATAGTGGGCAATTTAACCCTGATGCCTACACCCCTGATTACATGGAATGTTTTGGTTATTTTCAAATAGATCGTAGTTATATTGTTTACAATGCAAAGTTTATTACAGAAGGCTTAACAGTTTGTGTTTTGCAACCTGTCGAGCCAGAGCTTGGTGTTTGTAAACAGTATACTATAGATGGTGTTACATTTCAGGGTATACTACATACCTCTAATGCTAACATAACCACTTTCCATAATTTACTCTATTATGGTGATATGGTTAGTCATGTTAGGATTAAGGGTATAGTGTACTCCGTTGAGCCATGTAACAGTTTTTATTACAGCGTGTTAAAGACCAGGTCTGAAGTAGGTTACCTGTATTCTGGTGCTAATTGTAATAGTAGTGATGTTGTAACATTTTCACGTCGTGCCAGAGCCCGTACACTCACTGATAGCAGTCTGGGTTGTCTGGTCGATGTACAACTAACCAATAACAATTACACCACATGTAGTTACCCTATAGGTAATGGTCTTTGTGCTGATGTTAATGTAACAGGTATGCCTGTTGTAGGCAATATTTACATACAGCCTCATGACACTGATTATGCTAGGCCTATTCTTAGTCCACAGATTGTTTCTTTGCCACTGGATCACGTCATCAATGTTAAGGAGCAGTTTGTTCAAACATCAGCTCCGAAGTTTGATGTCGATTGTGAACGTTACATTTGTGACGTATCTGTTCAGTGTAAGGAACTTCTTGCAAAGTATGGTGGTTACTGCCCTAAGATTGTTAGTGATATTAAGTCTTCAAGTTTGCAGCTTGATTACCAAGTGCAGGGCATATATAAAACCCTTAATGTTGATGTTAAGGTACCTGATGTTGATTTTGGTGCATTTAACTTCAGCATGTTTGAATCAGAACCTAATGGACGCTCCTTTATTGAGGACATACTCTTTGATAAAATTGTGACTACAGGTCCAGGGTTTTATCAGGACTACTATGATTGCAAGAAGATGAATCTTGAGGACATCACCTGTAAACAGTATTATAATGGTATTATGGTGATACCCCCCGTCATGGATGACACACTCATCACCTTCTGGTCATCAGCTGTTGCAGGCTCTATGACAGCAGGTCTTTTTGGTGGTCAAGCAGGTATGGTGTCTTGGTCCATAGCTGTTGCAGGTAGGCTTAATGCACTTGGTGTTATGCAAGACGCTCTTGTCAATGATGTTAATAAACTTGCTAATGGTTTTAACAACCTCACACAGTATGTGGCTGATGGTTTTAAAACCACTAGTCAAGCACTTTCTGCTATACAATCTGTTGTTAACAATAATGCACAGCAAATCTCTCAGCTAGTCCAGGGACTCAGCGAGAACTTTGGTGCTATTAGTAATAACTTTCTAGTCATAGCAGAACGGCTAGAGCGTCTAGAGGCCCAAATGCAGATGGATAGGCTTATTAATGGCCGTATGAATATATTGCAAAATTTTGTTACTAATTATAAACTTTCTATATCTGAGCTTAAATCACAGCAAATTCTTGCACAGAGTTTGGTTAATGAATGTGTTTACGCACAGAGCAATAGGAATGGTTTCTGTGGTGATGGTCTTCACCTTTTTTCCTTGATGCAACGAGCTCCTGATGGCATCATGTTTTTCCATTACACACTTGTGCCCAATAATACTATTGATGTTGAGACAACACCAGGTCTTTGTTTGGGTAATAATGTGTGTATTGCACCCAGAGATGGACTCTTTGTTAAGACCAATATTAGGTCTGATGTCTGGCATTTTACCACTCGTAATCTTTACAACCCACAAGCTATCACTGTTAATAACTCGGTTATAGTTAATGGTGGTGTAAATTTTACTAGTCTTAACCAGACTATTGAGGGAATTGAACCACCAACCATTCCTTCTTTTGATGAAGAATTTGAAGACTTGTACAAGAATATAACATTGGAGCTCGAACAGCTTAAAAATATAACATTTGACCCAGAACTACTTAATTTGACATATTATATAGATAGGCTCGATGAGCTTTCTACTAATGTGTCACAGTTGCACGTTGATATATCGGAGTTTAATAAGTATGTGCAATATATTAAGTGGCCCTGGTATGTCTGGCTCGCTATATTCTTGGTACTTGTACTTTTCAGCTTCATGTTGCTCTGGTGCTGCTGTGCAACTGGCTGTTGTGGTTGTTGCGGCATGCTAGGCTCTGCTTGTAATGGCTGTTGTACTAAACCTCAAACTGTTGAATTTGAAAAGGTCCACGTACAATGA
Protein
MALIFVLMLITLYRCPFVLCNFQVCTDQLRQQEVYLPNAVSNATYIATAVFPTRHWHCGSSSNSTPGDNKFNGIGVFVHRFNHPNWWHFAAYPAAPTNKTWILFWWHRATQASTVFQVCKYQQPAVDVLTSGFRCEAPTNPPCSAIVNMAIECLINSTFRPTTFSFSYVTWYNSEINAVIHGQRFSFVYEGFLWSNASAFCYDANGCIFNIPNTTSDWLVSTDSSGAINNFVDCGFDYESQLKCKNLVFELEPAVYHGAALPIESSVYYVANDLADCAFSFADIFSDGTGNYGGLRRHVFTNCWVNYTSWFLCDDGLACIIFNAIFSEVVYNLTQPDGLINPFLRCNGLDVYTIVKGCSAGYVLRYQLFDSGQFNPDAYTPDYMECFGYFQIDRSYIVYNAKFITEGLTVCVLQPVEPELGVCKQYTIDGVTFQGILHTSNANITTFHNLLYYGDMVSHVRIKGIVYSVEPCNSFYYSVLKTRSEVGYLYSGANCNSSDVVTFSRRARARTLTDSSLGCLVDVQLTNNNYTTCSYPIGNGLCADVNVTGMPVVGNIYIQPHDTDYARPILSPQIVSLPLDHVINVKEQFVQTSAPKFDVDCERYICDVSVQCKELLAKYGGYCPKIVSDIKSSSLQLDYQVQGIYKTLNVDVKVPDVDFGAFNFSMFESEPNGRSFIEDILFDKIVTTGPGFYQDYYDCKKMNLEDITCKQYYNGIMVIPPVMDDTLITFWSSAVAGSMTAGLFGGQAGMVSWSIAVAGRLNALGVMQDALVNDVNKLANGFNNLTQYVADGFKTTSQALSAIQSVVNNNAQQISQLVQGLSENFGAISNNFLVIAERLERLEAQMQMDRLINGRMNILQNFVTNYKLSISELKSQQILAQSLVNECVYAQSNRNGFCGDGLHLFSLMQRAPDGIMFFHYTLVPNNTIDVETTPGLCLGNNVCIAPRDGLFVKTNIRSDVWHFTTRNLYNPQAITVNNSVIVNGGVNFTSLNQTIEGIEPPTIPSFDEEFEDLYKNITLELEQLKNITFDPELLNLTYYIDRLDELSTNVSQLHVDISEFNKYVQYIKWPWYVWLAIFLVLVLFSFMLLWCCCATGCCGCCGMLGSACNGCCTKPQTVEFEKVHVQ

Summary

Uniprot
A0A240FW27  
Pubmed
28637760   
EMBL
KY967723    ASF90460.1   
Pfam
PF01601   Corona_S2
Interpro
IPR002552   Corona_S2
ProteinModelPortal
A0A240FW27  
PDB
5XLR     E-value=5e-105     Score= 357     Identity=28.54%     Cov(Q)=84.64%     Cov(P)=79.22%
3D Structure

Ontologies

GO
GO:0061025  P:membrane fusion
 GO:0016021  C:integral component of membrane
 GO:0019031  C:viral envelope
 GO:0046813  P:receptor-mediated virion attachment to host cell

Subcellular Location

From MSLVP

Topology

Length:
1126
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
23.25317
Exp number, first 60 AAs:
0.31256
Total prob of N-in:
0.00821
outside
1  -  1070
TMhelix
1071  -  1093
inside
1094  -  1126
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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