Strain
Canine_KY063617
(Region: China; Strain: Canine coronavirus isolate HLJ-072, complete genome.; Date: 1-Jul-16)
Gene
7A
Description
Annotated in NCBI,
7A
Location
GenBank Accession
Full name
Non-structural protein 7a
Alternative Name
11 kDa protein
Accessory protein 7a
Accessory protein 7a
Sequence
CDS
ATGCTCGTTTTCCTCCACGCTGTATTTATTACAGTTTTAATCTTACTACTAATTGGTAGACTCCAATTATTAGAAAGATTACTACTTAATCACTCTCTCAATCTTAAAACTGTCAATAATGTTTTAGGTGTGACTGACACTGGTCTGAAAGTAAATTGCTTGCAGCTTTTGAAACCAGACTGTCTTGATTTCAACATCTTACACAGGAGTTTAGCAGAAACCAGATTACTAAAAGTGGTACTTCGAGTAATCTTTCTAGTCTTACTAGGGTTTTGCTGCTACAGATTGTTAGTCACATTAATTTAA
Protein
MLVFLHAVFITVLILLLIGRLQLLERLLLNHSLNLKTVNNVLGVTDTGLKVNCLQLLKPDCLDFNILHRSLAETRLLKVVLRVIFLVLLGFCCYRLLVTLI
Summary
Similarity
Belongs to the coronaviruses ns7/ns7a protein family.
Keywords
Host membrane
Membrane
Reference proteome
Signal
Transmembrane
Transmembrane helix
Feature
chain Non-structural protein 7a
Uniprot
Proteomes
Pfam
PF02398
Corona_7
Interpro
IPR003449
Corona_7
ProteinModelPortal
Ontologies
KEGG
Subcellular Location
From MSLVP
Single-Pass Membrane
From Uniprot
Host membrane
Topology
Length:
101
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
42.20945
Exp number, first 60 AAs:
22.06991
Total prob of N-in:
0.89451
POSSIBLE N-term signal
sequence
inside
1 - 1
TMhelix
2 - 24
outside
25 - 78
TMhelix
79 - 98
inside
99 - 101
