Strain
Bat_KY073745
(Region: Kenya; Strain: NL63-related bat coronavirus strain BtKYNL63-9b, complete genome.; Date: 21-Jun-10)
Gene
N protein
Description
Annotated in NCBI,
N protein
Location
GenBank Accession
Full name
Nucleoprotein
Sequence
CDS
ATGGCAACTGTCAATTGGGCCGACGAATCCGATAAAGGCAATGGAAGAGGTGGGCGTGGTAGGAGAGGTCGCATCGACCCCTCTTATTACTCCCCTATCATTGTCGAAGGAAATGAAAAGCCCTGGAATGTCATCCCTAAAAACTTTGTCCCAAAAGGAAAAGGTGGAAAGGATGAACAAATTGGCTATTGGAATGAGCAACCACGCTGGCGCATGCGCAAAGGCGAAAAGGTTGAACTTCCCTCAAAGTGGCACTTTTACTATCTTGGAACTGGTCCCCAAAGCAAACTTAAATTCAGAGAGCGCGCTCAAGGCGTTGTCTGGGTTGCAGTCAATGGGGCCAAAACAGCTGACACCGGGCTTGGTACTCGCAAGAGAAACCAACAACCCATTGTTCCCACTTTTGATGTCAAAATCCCTTCAAACATCACCATTGTTGAGGACCATGATCGGTCTGCACCCAGCTCTCGTAGCCAAAGCCGTGGTCGATCTCAATCCCGCAATGACAACCGTTCCAACAATCAGTCTCGCAACCAGTCGCGTAACAACTCGCGATCTAGGTCCAACTCACGTGGTCGATCCGGAAATCCCACATCCCCGGACGATCTTGTTGCTGCTGTGCGAGCTGCTCTGGAGGGCATGGGCTTCGAACCCATCAAGAACGGTCAAAGTGGAAAGAACACTCCAAAGAGTGGTAATGCCACACCCAAAAAGCAGAAATCCCGTGCTTCATCACCTGCTCCTCGTCCAGCTTCTCCAAAGAAGCAAATGGACAAACCAAGATGGAAGCGCACACCAAATCAGGAAGAAGATGTCGTGAAGTGCTTCGGCCCTCGCGATTTCGACCACAACTTTGGTGACTCTGAGATTGTTCGTCTCGGAGTTGAAGCGCCACACTATCCACAGCTTGCCGAACTTGTGCCCTCACAGGCTGCTTTGCTGTTTGATAGTAACATTTCCACCAAGGAGCTGAAAGATCAGGTGATGATCACTTACACCTATAGTATGCTTGTGCCCAAAGACAACAAGCACCTAGGTCCTTTCCTGCAGCAAGTTAATGCTTTCGCTGATGGCGACAAAGTTCCAGCCCTGCCGCCAAAAGTGAAACGCCAAAAGTCCAAGACTGAAAAGAAAGATGACGTCCTGGATGGTCTGAATATTGCTGCCCCTGCTTTTGAGCCAAAAGAACAGCGCGAATCGCGCCCACTCAAGTTTTCTGAAGTTGCCAAAAATGCCGTCGACCCGCTCAATGAGCTGAAGGTCGAAATGGTAGATGAGGTTAAGTATGAGTCTTCTGCTTAA
Protein
MATVNWADESDKGNGRGGRGRRGRIDPSYYSPIIVEGNEKPWNVIPKNFVPKGKGGKDEQIGYWNEQPRWRMRKGEKVELPSKWHFYYLGTGPQSKLKFRERAQGVVWVAVNGAKTADTGLGTRKRNQQPIVPTFDVKIPSNITIVEDHDRSAPSSRSQSRGRSQSRNDNRSNNQSRNQSRNNSRSRSNSRGRSGNPTSPDDLVAAVRAALEGMGFEPIKNGQSGKNTPKSGNATPKKQKSRASSPAPRPASPKKQMDKPRWKRTPNQEEDVVKCFGPRDFDHNFGDSEIVRLGVEAPHYPQLAELVPSQAALLFDSNISTKELKDQVMITYTYSMLVPKDNKHLGPFLQQVNAFADGDKVPALPPKVKRQKSKTEKKDDVLDGLNIAAPAFEPKEQRESRPLKFSEVAKNAVDPLNELKVEMVDEVKYESSA
Summary
Function
Packages the positive strand viral genome RNA into a helical ribonucleocapsid (RNP) and plays a fundamental role during virion assembly through its interactions with the viral genome and membrane protein M. Plays an important role in enhancing the efficiency of subgenomic viral RNA transcription as well as viral replication.
Uniprot
EMBL
MG557844
MF094681
MF094682
MF094683
MF094684
MF769416
+ More
MF769417 MF769418 MF769419 MF769420 MF769421 MF769422 MF769423 MF769424 MF769425 MF769426 MF769427 MF769428 MF769429 MF769430 MF769431 MF769432 MF769433 MF769434 MF769435 MF769436 MF769437 MF769438 MF769439 MF769440 MF769441 MF769442 MF769443 MF769444 MH615810 MG605087 MG605088 MG605089 MG605090 MG605091 MG775251 MG775253 AVM41574.1 AVM80443.1 AVM80452.1 AVM80461.1 AVM80470.1 AVM80528.1 AVM80537.1 AVM80546.1 AVM80555.1 AVM80564.1 AVM80573.1 AVM80582.1 AVM80591.1 AVM80600.1 AVM80609.1 AVM80618.1 AVM80627.1 AVM80636.1 AVM80645.1 AVM80654.1 AVM80663.1 AVM80672.1 AVM80681.1 AVM80690.1 AVM80699.1 AVM80708.1 AVM80717.1 AVM80726.1 AVM80735.1 AVM80744.1 AVM80753.1 AVM80762.1 AVM80771.1 AVM80780.1 AXP98443.1 AXY04078.1 AXY04079.1 AXY04080.1 AXY04087.1 AXY04096.1
MF769417 MF769418 MF769419 MF769420 MF769421 MF769422 MF769423 MF769424 MF769425 MF769426 MF769427 MF769428 MF769429 MF769430 MF769431 MF769432 MF769433 MF769434 MF769435 MF769436 MF769437 MF769438 MF769439 MF769440 MF769441 MF769442 MF769443 MF769444 MH615810 MG605087 MG605088 MG605089 MG605090 MG605091 MG775251 MG775253 AVM41574.1 AVM80443.1 AVM80452.1 AVM80461.1 AVM80470.1 AVM80528.1 AVM80537.1 AVM80546.1 AVM80555.1 AVM80564.1 AVM80573.1 AVM80582.1 AVM80591.1 AVM80600.1 AVM80609.1 AVM80618.1 AVM80627.1 AVM80636.1 AVM80645.1 AVM80654.1 AVM80663.1 AVM80672.1 AVM80681.1 AVM80690.1 AVM80699.1 AVM80708.1 AVM80717.1 AVM80726.1 AVM80735.1 AVM80744.1 AVM80753.1 AVM80762.1 AVM80771.1 AVM80780.1 AXP98443.1 AXY04078.1 AXY04079.1 AXY04080.1 AXY04087.1 AXY04096.1
Pfam
PF00937
Corona_nucleoca
ProteinModelPortal
PDB
5N4K
E-value=2e-51 Score= 169 Identity=54.79%
Cov(Q)=33.72% Cov(P)=97.33%
3D Structure
Ontologies
GO
Subcellular Location
From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.
From Uniprot
Virion
Host endoplasmic reticulum-Golgi intermediate compartment
Host Golgi apparatus
Host endoplasmic reticulum-Golgi intermediate compartment
Host Golgi apparatus
Topology
Length:
433
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0024
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00949
outside
1 - 433
