Strain
Porcine_KY419103
(Region: USA; Strain: Porcine hemagglutinating encephalomyelitis virus strain PHEV CoV USA-15TOSU25049, complete genome.; Date: 15-Sep-15)
Gene
nonstructural protein
Description
Annotated in NCBI,
nonstructural protein
Location
GenBank Accession
Sequence
CDS
ATGGCCGTCTCATATGCAGACAATCCCAACCATTTTATTAATTTTCCACTTACCCAGTTTGATGGTTTTGTGTTAAATTATAAGGGTTTACAATCTCAACTTCTTGATGTAGGAGTGGATTGCAAAATACAAACAGCACCTCACATTAGTCTTACCATGCTGGATATACAGCCTGAAGACTATATTAGTGTTGATGTTGCTATTCAAGAAGCTATTGCTGATATGCATTGGGGTGAGGGTTTTCAGATCAAGTTTGATAACCCCCACATCCTAGGTAGATGTTTAGTTTTAGACGTTAAAGGTATACAAAAATTGCATGATGATTTAGTTAATCACATTCGTGCTAAAGGCTGTGTTGTTGACCAATCCAGAAAATGGATTGGCCACTGCACCATAGCTCAATTCTTGGATGCTGCACTTTCTATTAAAGAAAATGTTGATTTTATAAATTGCATGCAGTTCAATTATAAAATCACCATCAACCCTTCATCACCTGCTAGACTTGAAATAGTGAAGCTTGGTGCTGAAAAGAAGGATGGTTTTTATGAAACCGTAGTTAGCCATTGGATGGGAATTCGTCATGAATAA
Protein
MAVSYADNPNHFINFPLTQFDGFVLNYKGLQSQLLDVGVDCKIQTAPHISLTMLDIQPEDYISVDVAIQEAIADMHWGEGFQIKFDNPHILGRCLVLDVKGIQKLHDDLVNHIRAKGCVVDQSRKWIGHCTIAQFLDAALSIKENVDFINCMQFNYKITINPSSPARLEIVKLGAEKKDGFYETVVSHWMGIRHE
Summary
Uniprot
Pubmed
EMBL
Proteomes
Pfam
PF05213
Corona_NS2A
Interpro
IPR039573
NS2A-like
ProteinModelPortal
PDB
4Z5V
E-value=4e-63 Score= 194 Identity=51.79%
Cov(Q)=100.00% Cov(P)=93.75%
3D Structure
Ontologies
KEGG
Subcellular Location
From MSLVP
Cytoplasm
Topology
Length:
195
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00848
Exp number, first 60 AAs:
0.00771
Total prob of N-in:
0.13821
outside
1 - 195
