Coronavirus Database

Strain

Cow_LC088094 (Region: Japan: Ishikawa; Strain: Bovine torovirus genomic RNA, complete genome, strain: BToV Ishikawa/2010.; Date: 2010/1/29)

Gene

nucleocapsid phosphoprotein

Description

Annotated in NCBI, nucleocapsid phosphoprotein

Location

LC088094(+):27622-28113

GenBank Accession

BAU21409.1

CDS

ATGAATTCTATGCTTAATCCAAATGCTATGCCATTTCAGCCACAGCCACAAGTAGTGGCTATGCCCATTCAATATCCTATGGGCTTTCAACCACGGTTTCGAAGGAGGCGTAACCCTGGTTTTAGACCTATGTTTCAGAGGCGTAATAATTCTAACCAGAATCGCAGCCGTCAGAGCAGACCACGTATTCAAAACCAAAGACGTGGTATCAATACCTCACGCACCCAACAACGTGCTAATGGGCGCCAAAATAACCAGCAGTCACTATCTTTGCCATTTGAACAACAGTTACTTATGATGGCAAATGAGACTGCACTTTCCGCAACATTCCCACCTGAGTTGCAGAGTTTGGCGCCTACAAAGTTAGTGAAGATTGCTAAGAGGGCTGCTATGCAGATAGTTTCTGGCCATGCCACTGTTGAAGTTTCCAGTGGTGATCAAGATACGCCTCATAAAATTGCAACTTTTACAATAAAAGTGGCTTTGAATTAA

Protein

MNSMLNPNAMPFQPQPQVVAMPIQYPMGFQPRFRRRRNPGFRPMFQRRNNSNQNRSRQSRPRIQNQRRGINTSRTQQRANGRQNNQQSLSLPFEQQLLMMANETALSATFPPELQSLAPTKLVKIAKRAAMQIVSGHATVEVSSGDQDTPHKIATFTIKVALN

Uniprot

Q70KL8 Q70KL9 A0A239QNX7 A0A411AH25 C1J1E1 Q70KP5 + More
Q70KM1 Q70KM3 Q70KM0 A0A3G4S8K3 A0A481ZL24 J7MDP7 J7M5N3 Q70KP7 Q70KP6 A0A097P9L0 Q70KP9 A0A089N0X4 J7M8N9 A0A0U5AV27 A7BI33 B8YPD3 B8YPD7 B8YPD5 B8YPD4 B8YPD6 U5IJ66 Q70KP8 B8YPC7 B8YPC8 B8YPD0 B8YPC9 B8YPD1 B8YPD2 A0A513Q9V3

Pubmed

12915570 26708248 22167249 17567770 20127374 24122107 + More

EMBL

AJ575389 CAE01355.1 LC088094 AJ575388 BAU21409.1 CAE01354.1 + More
LT900503 SNT95687.1 MG663095 MG663096 QAX33468.1 QAX33469.1 FJ232068 ACO48288.1 AJ575362 CAE01328.1 MG957146 AJ575385 AJ575386 MG663097 AYU75164.1 CAE01351.1 CAE01352.1 QAX33470.1 AJ575384 CAE01350.1 AJ575387 CAE01353.1 MG957145 AYU75160.1 MH603532 QBK95471.1 AB661450 BAM36706.1 AB661452 BAM36708.1 AJ575360 CAE01326.1 AJ575361 CAE01327.1 KM403390 AIU41588.1 AJ575358 CAE01324.1 KM036209 AIQ77662.1 AB661451 BAM36707.1 LC088095 BAU21415.1 AB285125 BAF75423.1 FJ555608 ACL34415.1 FJ555612 ACL34419.1 FJ555610 ACL34417.1 FJ555609 ACL34416.1 FJ555611 ACL34418.1 JQ740198 JQ860350 AFZ75474.1 AGB05585.1 AJ575359 CAE01325.1 FJ555602 ACL34409.1 FJ555603 ACL34410.1 FJ555605 ACL34412.1 FJ555604 ACL34411.1 FJ555606 ACL34413.1 FJ555607 ACL34414.1 MK379077 QBJ02016.1

Proteomes

UP000102793 UP000269215 UP000119381 UP000138412 UP000111898

Pfam

PF11030 Nucleocapsid-N

Interpro

IPR020253 Torovirus_nucleocapsid

ProteinModelPortal

Q70KL8 Q70KL9 A0A239QNX7 A0A411AH25 C1J1E1 Q70KP5 + More
Q70KM1 Q70KM3 Q70KM0 A0A3G4S8K3 A0A481ZL24 J7MDP7 J7M5N3 Q70KP7 Q70KP6 A0A097P9L0 Q70KP9 A0A089N0X4 J7M8N9 A0A0U5AV27 A7BI33 B8YPD3 B8YPD7 B8YPD5 B8YPD4 B8YPD6 U5IJ66 Q70KP8 B8YPC7 B8YPC8 B8YPD0 B8YPC9 B8YPD1 B8YPD2 A0A513Q9V3

KEGG

vg:17603140

GO

GO:0019013 C:viral nucleocapsid

From MSLVP

Capsid

Length:

163

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00906999999999998

Exp number, first 60 AAs:

0.00854

Total prob of N-in:

0.11964

outside

1 - 163

Sequence

Summary

Ontologies

Subcellular Location

Topology