CoVDB Coronavirus Database (v3)   
Strain
Cow_LC088095 (Region: Japan: Kagoshima;  Strain: Bovine torovirus genomic RNA, complete genome, strain: BToV Kagoshima/2014.;  Date: 2014/11/16)
Gene
nucleocapsid phosphoprotein
Description
Annotated in NCBI,  nucleocapsid phosphoprotein
Location
LC088095(+):27614-28105
GenBank Accession
BAU21415.1
 

Sequence

CDS
ATGAATTCTATGCTTAATCCAAATGCTATGCCATTTCAGCCTCAGCCACAAGTAGTGGCTATGCCCATTCAATATCCTATGGGCTTTCAACCACGGTTTCGAAGGAGGCGTAACCCTGGTTTTAGACCTATGTTTCAGAGGCGTAATAATTCTAACCAGAATCGCAGCCGTCAGAGTAGACCACGTATTCAAAACCAAAGACGTGGTATCAATACTTCACGCACCCAACAACGTGCTAATGGGCGTCAAAATAATCAGCAGTCACTATCTCTGCCATTTGAACAACAGTTACTTATGATGGCAAATGAGACTGCACTTTCCGCAACATTTCTACCTGAGTTGCAGAGTTTGGCGCCTACAAAGTTAGTGAAGATTGCTAAGAGGGCTGCTATGCAGATAGTTTCTGGCCATGCCACTGTTGAAGTTTCCAGTGGTGATCAAGATACGCATCATAAAATTGCAACTTTTACAATAAAAGTGGCTTTGAATTAA
Protein
MNSMLNPNAMPFQPQPQVVAMPIQYPMGFQPRFRRRRNPGFRPMFQRRNNSNQNRSRQSRPRIQNQRRGINTSRTQQRANGRQNNQQSLSLPFEQQLLMMANETALSATFLPELQSLAPTKLVKIAKRAAMQIVSGHATVEVSSGDQDTHHKIATFTIKVALN

Summary

Uniprot
A0A0U5AV27   Q70KL8   Q70KL9   A0A239QNX7   A0A411AH25   Q70KM1   + More
Q70KP5   Q70KM0   C1J1E1   Q70KM3   A0A3G4S8K3   J7MDP7   J7M5N3   Q70KP7   Q70KP6   A0A481ZL24   A0A089N0X4   Q70KP9   A0A097P9L0   J7M8N9   A7BI33   B8YPD3   B8YPD7   B8YPD5   B8YPD4   B8YPD6   U5IJ66   Q70KP8   B8YPC7   B8YPC8   B8YPC9   B8YPD1   B8YPD0   B8YPD2   A0A513Q9V3  
Pubmed
26708248    12915570    22167249    17567770    20127374    24122107    + More
EMBL
LC088095    BAU21415.1    AJ575389    CAE01355.1    LC088094    AJ575388    + More
BAU21409.1    CAE01354.1    LT900503    SNT95687.1    MG663095    MG663096    QAX33468.1    QAX33469.1    MG957146    AJ575385    AJ575386    MG663097    AYU75164.1    CAE01351.1    CAE01352.1    QAX33470.1    AJ575362    CAE01328.1    AJ575387    CAE01353.1    FJ232068    ACO48288.1    AJ575384    CAE01350.1    MG957145    AYU75160.1    AB661450    BAM36706.1    AB661452    BAM36708.1    AJ575360    CAE01326.1    AJ575361    CAE01327.1    MH603532    QBK95471.1    KM036209    AIQ77662.1    AJ575358    CAE01324.1    KM403390    AIU41588.1    AB661451    BAM36707.1    AB285125    BAF75423.1    FJ555608    ACL34415.1    FJ555612    ACL34419.1    FJ555610    ACL34417.1    FJ555609    ACL34416.1    FJ555611    ACL34418.1    JQ740198    JQ860350    AFZ75474.1    AGB05585.1    AJ575359    CAE01325.1    FJ555602    ACL34409.1    FJ555603    ACL34410.1    FJ555604    ACL34411.1    FJ555606    ACL34413.1    FJ555605    ACL34412.1    FJ555607    ACL34414.1    MK379077    QBJ02016.1   
Proteomes
UP000138412    UP000102793    UP000269215    UP000119381    UP000111898   
Pfam
PF11030   Nucleocapsid-N
Interpro
IPR020253   Torovirus_nucleocapsid
ProteinModelPortal
A0A0U5AV27   Q70KL8   Q70KL9   A0A239QNX7   A0A411AH25   Q70KM1   + More
Q70KP5   Q70KM0   C1J1E1   Q70KM3   A0A3G4S8K3   J7MDP7   J7M5N3   Q70KP7   Q70KP6   A0A481ZL24   A0A089N0X4   Q70KP9   A0A097P9L0   J7M8N9   A7BI33   B8YPD3   B8YPD7   B8YPD5   B8YPD4   B8YPD6   U5IJ66   Q70KP8   B8YPC7   B8YPC8   B8YPC9   B8YPD1   B8YPD0   B8YPD2   A0A513Q9V3  

Ontologies

KEGG
vg:17603140    
GO
GO:0019013  C:viral nucleocapsid

Subcellular Location

From MSLVP
Capsid

Topology

Length:
163
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01216
Exp number, first 60 AAs:
0.00854
Total prob of N-in:
0.11964
outside
1  -  163
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号
In processing...
Login to ASFVdb
Email
Password
Please go to Regist if without an account.
If you have forgotten your password, you can once again Regist an account with a registed or new email.
Cancel Go
Change my password
Enter new password
Reenter new password
Cancel Go
Regist an account of ASFVdb
It is required that you provide your institutional e-mail address (with edu or org in the domain) as confirmation of your affiliation.
Enter email
Reenter email
First Name
Last Name
Institution
You can directly go to if with an account.
Cancel Regist
Registraion Success
Your password has been sent to your email.
Please check it and login later.
Welcome to use ASFVdb.
OK