Strain

Porcine_LT898414 (Region: Germany; Strain: Porcine epidemic diarrhea virus isolate PEDV_GER_L01060-K07_15-02_2015 genome assembly, complete genome: monopartite.; Date: )

Gene

accessory membrane protein

Description

Annotated in NCBI, accessory membrane protein

Location

LT898414(+):24785-25459

GenBank Accession

SNQ27913.1

Sequence

CDS

ATGTTTCTTGGACTTTTTCAATACACGATTGACACAGTTGTCAAAGATGTCTCAAAGTCTGCTAACTTGTCTTTGGATGCTGTCCAAGAGTTGGAGCTCAATGTAGTTCCAATTAGACAAGCTTCAAATGTGACGGGTTTTCTTTTCACCAGTGTTTTTATCTACTTCTTTGCACTGTTTAAAGCGTCTTCTTTGAGGCGCAATTATATTATGTTGGCAGCGCGTTTTGCTGTCATTGTTCTTTATTGCCCAATTTTATATTATTGTGGTGCATTTTTAGATGCAACTATTATTTGTTGCACACTTATTGGCAGGCTTTGTTTAGTCTGCTTTTACTCCTGGCGCTATAAAAATGCGCTCTTTATTATTTTTAATACTACGACACTTTCTTTCCTCAATGGTAAAGCAGCTTATTATGACGGCAAATCCATTGTGATTTTAGAAGGTGGTGACCATTACATCACTTTTGGCAACTCTTTTGTTGCTTTTGTTAGTAGCATCGACTTGTATCTAGCTATACGTGGGCGGCAAGAAGCTGACCTACAGCTGTTGCGAACTGTTGAGCTTCTTGATGGCAAGAAGCTTTATGTCTTTTCGCAACATCAAATTGTTGGCATTACTAATGCTGCATTTGACTCAATTCAACTAGACGAGTATGCTACAATTAGTGAATGA

Protein

MFLGLFQYTIDTVVKDVSKSANLSLDAVQELELNVVPIRQASNVTGFLFTSVFIYFFALFKASSLRRNYIMLAARFAVIVLYCPILYYCGAFLDATIICCTLIGRLCLVCFYSWRYKNALFIIFNTTTLSFLNGKAAYYDGKSIVILEGGDHYITFGNSFVAFVSSIDLYLAIRGRQEADLQLLRTVELLDGKKLYVFSQHQIVGITNAAFDSIQLDEYATISE

Summary

Uniprot

A0A097I528

Pubmed

27178127

EMBL

KM048307 KP281610 KP281611 KR078319 KU977481 AIT56240.1 + More
AKA64517.1 AKA64518.1 ALG76018.1 AOZ60323.1

Pfam

PF03053 Corona_NS3b

Interpro

IPR004293 Coronavirus_Orf3b

ProteinModelPortal

A0A097I528

Ontologies

GO:0016021 C:integral component of membrane

Subcellular Location

From MSLVP

Multi-Pass Membrane

Topology

Length:

224

Number of predicted TMHs:

Exp number of AAs in TMHs:

90.51986

Exp number, first 60 AAs:

19.43944

Total prob of N-in:

0.04518

POSSIBLE N-term signal

sequence

outside

1 - 40

TMhelix

41 - 63

inside

64 - 75

TMhelix

76 - 98

outside

99 - 224