Strain
Porcine_MF083115
(Region: China; Strain: Porcine hemagglutinating encephalomyelitis virus strain CC14, complete genome.; Date: 14-Mar)
Gene
non-structural protein 2a
Description
Annotated in NCBI,
non-structural protein 2a
Location
GenBank Accession
Sequence
CDS
ATGGCCGTCTCATATGCAGACAATCCGAATCATTTTATTAATTTTCCACTTACCCAGTTTGATGGTTTTGTGTTAAATTATAAGGGTTTACAATTTCAACTTCTCGATGAAGGAGTGGATTGTAAAATACAAATAGCACCTCACATTAGTCTTACCATGCTGGATATACAGCCTGAAGACTATATAAGTGTTGATGTTGCTATTCAAGAAGTTATTGATGATATGCATTGGGGTGAGGGTTTTCAGATTAAGTTTGATAACCCCCACATCCTAGGAAGATGCTTAGTTTTAGACGTTAAAGGTGTAGAAGAGTTGCATGATGATTTAGTTAATTACATTCGTGATAAAGGTTGTGTTGCCGACCAATCCAGAAAATGGATTGGCCACTGCACCATAGCTCAACTCACGGATGCTGCACTTTACATTAAAGAAAATGTTGATTTTATAAATAGCATGCAGTTCAATTATAATATCACCATCAACCCTTCATCACCCGCTAGACTTGAAATAGTGAAGCTTGGTGCTGAAAAGAAGGATGGTTTTTATGAAACTGTAGTTAGCCATTGGATGGGAATTCGTCATGAATATAAACCACCCACTGATAAGCTAGCTAATATTATGGGTTATTGTTGTTTAGAATTGGTTCGTAAAGAGCTGGAGGAAGGTGATCTTCCCGAGAATGATGATTATGCTTGGTTTTAG
Protein
MAVSYADNPNHFINFPLTQFDGFVLNYKGLQFQLLDEGVDCKIQIAPHISLTMLDIQPEDYISVDVAIQEVIDDMHWGEGFQIKFDNPHILGRCLVLDVKGVEELHDDLVNYIRDKGCVADQSRKWIGHCTIAQLTDAALYIKENVDFINSMQFNYNITINPSSPARLEIVKLGAEKKDGFYETVVSHWMGIRHEYKPPTDKLANIMGYCCLELVRKELEEGDLPENDDYAWF
Summary
Uniprot
Pubmed
EMBL
Proteomes
Pfam
PF05213
Corona_NS2A
Interpro
IPR039573
NS2A-like
ProteinModelPortal
PDB
4Z5V
E-value=3e-68 Score= 208 Identity=52.20%
Cov(Q)=87.98% Cov(P)=98.56%
3D Structure
Ontologies
KEGG
Subcellular Location
From MSLVP
Cytoplasm
Topology
Length:
233
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01824
Exp number, first 60 AAs:
0.01751
Total prob of N-in:
0.08621
outside
1 - 233
