Strain
Bat_MF094687
(Region: China; Strain: Swine acute diarrhea syndrome related coronavirus isolate 141388, complete genome.; Date: 2013-2016)
Gene
nonstructural protein 3
Description
Annotated in NCBI,
nonstructural protein 3
Location
GenBank Accession
Sequence
CDS
ATGTTTGGTGGACTTTTCCAGTTGACACTTGAGGGTGTCGTTAATTCTACTATTAGAGCTGCTAAACTTGACCCTAATGACGAAGCTATTATTAGGGAACACGTGCAGCCTGCTATTAACAGTGCCAATATGCTGGGCTATATGTTGACTAGCATGTTTGTGTGGTACTTTGCATTGTACAAGCCTTCAACAAAACGTGGCAGAATTGCTATGTTTGTTTCTAAGTTGCTTGTAATCTTTGCTTATGTACCTATTATTGCCTACTGTGGCGGTGTTGTTGACAGTTGCATTATACTTGTTGCTGTTGTAAGTAGATTACTGTACACCAGTTATTATGCTTTTTGCTACAGGAGTTTTGCTTTTGTCCTTTTTAATGCACCGACACTGTGCTTCATCAACGGCACAGTTTGTCTCTACTCTAGAATTACTAAAGTAGCTGACTATATTGCTCTCTATGGTGGTCACCATTATGTGACCATCGAGACGACTGCTGTTGAATTTGCGCACAAGGACTCACTCTATGTTGCTATTAGAGGTAAGAAGGAATTAAATCTCTACCTATCCAAAGCCATGGAGTTGTCTGATGGTGCGTATATTTATTTATTTACTAACACACCTTTTGTTGGTATCTATAACGCTAACTTTCAGCTGCAAGAAACTCAACTAAACTATGTTTCTGAAGATTGTTGA
Protein
MFGGLFQLTLEGVVNSTIRAAKLDPNDEAIIREHVQPAINSANMLGYMLTSMFVWYFALYKPSTKRGRIAMFVSKLLVIFAYVPIIAYCGGVVDSCIILVAVVSRLLYTSYYAFCYRSFAFVLFNAPTLCFINGTVCLYSRITKVADYIALYGGHHYVTIETTAVEFAHKDSLYVAIRGKKELNLYLSKAMELSDGAYIYLFTNTPFVGIYNANFQLQETQLNYVSEDC
Summary
Uniprot
EMBL
Pfam
PF03053
Corona_NS3b
Interpro
IPR004293
Coronavirus_Orf3b
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Multi-Pass Membrane
Topology
Length:
229
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
79.85033
Exp number, first 60 AAs:
20.78813
Total prob of N-in:
0.03803
POSSIBLE N-term signal
sequence
outside
1 - 37
TMhelix
38 - 60
inside
61 - 80
TMhelix
81 - 103
outside
104 - 117
TMhelix
118 - 140
inside
141 - 229
