Strain

Mink_MF113046 (Region: China; Strain: Alphacoronavirus Mink/China/1/2016, complete genome.; Date: 2016)

Gene

non-structural protein 7a

Description

Annotated in NCBI, non-structural protein 7a

Location

MF113046(+):27529-27825

GenBank Accession

AVY53340.1

Full name

Non-structural protein 7a

Alternative Name

11 kDa protein
Accessory protein 7a
X3 protein

Sequence

CDS

ATGCTAGTATGTCTGCATGTTGTCCTGGTTCTAGTATTAATATGCCTGGTTTTGAAGCGTATTAAATTACTAGAGCAGTTAGTGCTTAATGCCATTCTCAATTTAACTACACTAACTAACGTGCTTGATATAGCCGATAGTGGTGTGAAGGTTAAATATTTTCAATTGTTAAAACCTGATTGTCTAGATCTTTATAGTTTACAGCGTGCTATTGTTGAAGTGCGCATTCTTAGACTATTGATTAGGGTTTTATTCTTTATTGTGCTATTTTATCTCATTGTATGCGTTTTAATCTAA

Protein

MLVCLHVVLVLVLICLVLKRIKLLEQLVLNAILNLTTLTNVLDIADSGVKVKYFQLLKPDCLDLYSLQRAIVEVRILRLLIRVLFFIVLFYLIVCVLI

Summary

Similarity

Belongs to the coronaviruses ns7/ns7a protein family.

Keywords

Host membrane Membrane Signal Transmembrane Transmembrane helix

Feature

chain Non-structural protein 7a

Uniprot

Q04703

Pubmed

1329312

EMBL

X66717

PRIDE

Q04703

Pfam

PF02398 Corona_7

Interpro

IPR003449 Corona_7

ProteinModelPortal

Q04703

Ontologies

GO:0033644 C:host cell membrane
GO:0016021 C:integral component of membrane

Subcellular Location

From MSLVP

Single-Pass Membrane

From Uniprot

Host membrane

Topology

Length:

Number of predicted TMHs:

Exp number of AAs in TMHs:

40.52594

Exp number, first 60 AAs:

19.83357

Total prob of N-in:

0.68457

POSSIBLE N-term signal

sequence

inside

1 - 1

TMhelix

2 - 24

outside

25 - 74

TMhelix

75 - 97

inside

98 - 98