Strain
Human_OC43_MF314143
(Region: USA: Little Rock, Arkansas; Strain: Human coronavirus OC43 isolate HCoV-OC43/USA/ACRI_0052/2016, complete genome.; Date: 7-Mar-16)
Gene
non-structural protein 2a
Description
Annotated in NCBI,
non-structural protein 2a
Location
GenBank Accession
Sequence
CDS
ATGGCTGTCGCTTATGCAGACAAGCCTAATCATTTTATCAATTTTCCACTTACCCAGTTTCAGGGTTTTGTGTTAAATTATAAAGGTTTACAATTTCAAATTCTCGATGAAGGATTGGATTGTAAAATACAAACAGCTCCACACATTAGTCTTACTATGCTGGATATACAGCCTGAAGACTATAAAAGTGTTGATGTCGCTATTCAAGAAGTTATTGATGATATGCTTTGGGGTGATGGTTTTCAGATTAAATTTGAGAATCCTCACATCCTAGGAAGATGCATAGTTTTAGATGTTAAAGGTTTAGAAGAATTGCATGACGATTTAGTTAATTACATTCGTGATAAAGGTTGTGTTGTTGACCAATCCAGGAAATGGATTGGCCATTGCACCATAGCTCAACTCACGGATGCAGCACTGTCCATTAAGGAAAATGTTGATTTTATAAACAGCATGCAATTCAATTATAAAATTACCATCAACCCCTCATCACCGGCTAGACTTGAAATAGTTAAGCTCGGTGCTGAAAAGAAAGATGGTTTTTATGAAACCATAGTTAGTCACTGGATGGGAATTCGTTTTGAATATACATCACCCACTGATAAGCTAGCTATGATTATGGGTTATTGTTGTTTAGATGTGGTACGTAAAGAGCTAGAAGAAGGCGATCTTCCTGAGAATGATGATGATGCTTGGTTTAAGCTATCGTACCATTATGAAAACAATTCTTGGTTCTTCCGACATGTCTACAGGAAAAGTTTTCATTTCCGTAAGGCTTGTCAAAATTTAGATTGTAATTGTTTGGGGTTTTATGAATCTTCAGTTGAAGAATATTAA
Protein
MAVAYADKPNHFINFPLTQFQGFVLNYKGLQFQILDEGLDCKIQTAPHISLTMLDIQPEDYKSVDVAIQEVIDDMLWGDGFQIKFENPHILGRCIVLDVKGLEELHDDLVNYIRDKGCVVDQSRKWIGHCTIAQLTDAALSIKENVDFINSMQFNYKITINPSSPARLEIVKLGAEKKDGFYETIVSHWMGIRFEYTSPTDKLAMIMGYCCLDVVRKELEEGDLPENDDDAWFKLSYHYENNSWFFRHVYRKSFHFRKACQNLDCNCLGFYESSVEEY
Summary
Uniprot
Pubmed
EMBL
Proteomes
Pfam
PF05213
Corona_NS2A
Interpro
IPR039573
NS2A-like
ProteinModelPortal
PDB
4Z5V
E-value=1e-66 Score= 206 Identity=51.24%
Cov(Q)=72.30% Cov(P)=96.63%
3D Structure
Ontologies
KEGG
Subcellular Location
From MSLVP
Cytoplasm
Topology
Length:
278
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0766
Exp number, first 60 AAs:
0.07606
Total prob of N-in:
0.06927
outside
1 - 278
