Strain
Porcine_MF370205
(Region: China: Guangdong; Strain: Rhinolophus bat coronavirus HKU2 isolate Swine enteric alphacoronavirus CH/GD-01/2017/P2, complete genome.; Date: 2017)
Gene
ORF3 protein
Description
Annotated in NCBI,
ORF3 protein
Location
GenBank Accession
Sequence
CDS
ATGTTTGGTGGACTTTTCCAGTTGACACTTGAGGGTGTCGTTAACTCTACTATTAGAGCTGCTAAACTTGACCCTAATGACGAAGCTATTATTAGGGAACAAGTGCAGCCTGCTATTAACGGTGCCAATATGCTGGGCTATATGTTGACTAGCATGTTTGTGTGGTACTTTGCATTGTACAAGCCTTCAACAAGACGTGGCAGAATTGCTATGTTTGTTTCTAAGTTGCTCGTAATCTTTGCTTACGTACCTATTATTGCTTACTGTGGCGGTGTTGTTGACAGTTGCATTATACTTGTTGCTGTTGTAAGCAGATTACTGTATACCAGTTATTATGCTTTTTGTTACAGGAGTTTTGCTTTTGTTCTCTTTAATGCACCGACACTGTGCTTCATCAACGGCACCGTTTGTCTCTACTCTAGAATTACTAAAGTAGCTGACTATATTGCTCTCTATGGTGGTCACCATTATGTGACCATCGAGACAACTGCTGTTGAATTTGCGCACAAGGACTCACTCTATGTTGCTATTAGAGGTAAGAAGGAATTAAACCTTTACTTATCTAAAGCAATGGAATTGTCTGATAGTGCGTATATTTACTTATTTACTAACACACCTTTTGTTGGTATCTATAACGCTAATTTTCAGCTGCAAGAAACTCAACTAAACTATGTTTCTGAAGATTGTTGA
Protein
MFGGLFQLTLEGVVNSTIRAAKLDPNDEAIIREQVQPAINGANMLGYMLTSMFVWYFALYKPSTRRGRIAMFVSKLLVIFAYVPIIAYCGGVVDSCIILVAVVSRLLYTSYYAFCYRSFAFVLFNAPTLCFINGTVCLYSRITKVADYIALYGGHHYVTIETTAVEFAHKDSLYVAIRGKKELNLYLSKAMELSDSAYIYLFTNTPFVGIYNANFQLQETQLNYVSEDC
Summary
Uniprot
EMBL
Pfam
PF03053
Corona_NS3b
Interpro
IPR004293
Coronavirus_Orf3b
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Multi-Pass Membrane
Topology
Length:
229
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
78.0845200000001
Exp number, first 60 AAs:
21.29262
Total prob of N-in:
0.02467
POSSIBLE N-term signal
sequence
outside
1 - 37
TMhelix
38 - 60
inside
61 - 80
TMhelix
81 - 103
outside
104 - 117
TMhelix
118 - 140
inside
141 - 229
