CoVDB Coronavirus Database (v3)   
Strain
Porcine_MF769421 (Region: China;  Strain: Swine acute diarrhea syndrome coronavirus isolate 211, complete genome.;  Date: 2017)
Gene
nostructural protein 3
Description
Annotated in NCBI,  nostructural protein 3
GenBank Accession
 

Sequence

CDS
ATGTTTGGTGGACTTTTCCAGTTGACACTTGAGGGTGTCGTTAACTCTACTATTAGAGCTGCTAAACTTGACCCTAATGACGAAGCTATTATTAGGGAACAAGTGCAGCCTGCTATTAACGGTGCCAATATGCTGGGCTATATGTTGACTAGCATGTTTGTGTGGTACTTTGCATTGTACAAGCCTTCAACAAGACGTGGCAGAATTGCTATGTTTGTTTCTAAGTTGCTCGTAATCTTTGCTTACGTACCTATTATTGCTTACTGTGGCGGTGTTGTTGACAGTTGCATTATACTTGTTGCTGTTGTAAGCAGATTACTGTATACCAGTTATTATGCTTTTTGTTACAGGAGTTTTGCTTTTGTTCTCTTTAATGCACCGACACTGTGCTTCATCAACGGCACCGTTTGTCTCTACTCTAGAATTACTAAAGTAGCTGACTATATTGCTCTCTATGGTGGTCACCATTATGTGACCATCGAGACAACTGCTGTTGAATTTGCGCACAAGGACTCACTCTATGTTGCTATTAGAGGTAAGAAGGAATTAAACCTTTACTTATCTAAAGCAATGGAATTGTCTGATGGTGCGTATATTTACTTATTTACTAACACACCTTTTGTTGGTATCTATAACGCTAATTTTCAGCTGCAAGAAACTCAACTAAACTATGTTTCTGAAGATTGTTGA
Protein
MFGGLFQLTLEGVVNSTIRAAKLDPNDEAIIREQVQPAINGANMLGYMLTSMFVWYFALYKPSTRRGRIAMFVSKLLVIFAYVPIIAYCGGVVDSCIILVAVVSRLLYTSYYAFCYRSFAFVLFNAPTLCFINGTVCLYSRITKVADYIALYGGHHYVTIETTAVEFAHKDSLYVAIRGKKELNLYLSKAMELSDGAYIYLFTNTPFVGIYNANFQLQETQLNYVSEDC

Summary

Pfam
PF03053   Corona_NS3b
Interpro
IPR004293   Coronavirus_Orf3b
ProteinModelPortal

Ontologies

Subcellular Location

From MSLVP
Multi-Pass Membrane

Topology

Length:
229
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
80.3016300000001
Exp number, first 60 AAs:
21.27789
Total prob of N-in:
0.03022
POSSIBLE N-term signal
sequence
outside
1  -  37
TMhelix
38  -  60
inside
61  -  80
TMhelix
81  -  103
outside
104  -  117
TMhelix
118  -  140
inside
141  -  229
 
 
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