Strain
Porcine_MF769437
(Region: China; Strain: Swine acute diarrhea syndrome coronavirus isolate 54, complete genome.; Date: 2017)
Gene
nostructural protein 3
Description
Annotated in NCBI,
nostructural protein 3
Location
GenBank Accession
Sequence
CDS
ATGTTTGGTGGACTTTTCCAGTTGACACTTGAGGGTGTCGTTAACTCTACTATTAGAGCTGCTAAACTTGACCCTAATGACGAAGCTATTATTAGGGAACAAGTGCAGCCTGCTATTAACGGTGCCAATATGCTGGGCTATATGTTGACTAGCATGTTTGTGTGGTACTTTGCATTGTACAAGCCTTCAACAAGACGTGGCAGAATTGCTATGTTTGTTTCTAAGTTGCTCGTAATCTTTGCTTACGTACCTATTATTGCTTACTGTGGCGGTGTTGTTGACAGTTGCATTATACTTGTTGCTGTTGTAAGCAGATTACTGTATACCAGTTATTATGCTTTTTGTTACAGGAGTTTTGCTTTTGTTCTCTTTAATGCACCGACACTGTGCTTCATCAACGGCACCGTTTGTCTCTACTCTAGAATTACTAAAGTAGCTGACTATATTGCTCTCTATGGTGGTCACCATTATGTGACCATCGAGACAACTGCTGTTGAATTTGCGCACAAGGACTCACTCTATGTTGCTATTAGAGGTAAGAAGGAATTAAACCTTTACTTATCTAAAGCAATGGAATTGTCTGATGGTGCGTATATTTACTTATTTACTAACACACCTTTTGTTGGTATCTATAACGCTAATTTTCAGCTGCAAGAAACTCAACTAAACTATGTTTCTGAAGATTGTTGA
Protein
MFGGLFQLTLEGVVNSTIRAAKLDPNDEAIIREQVQPAINGANMLGYMLTSMFVWYFALYKPSTRRGRIAMFVSKLLVIFAYVPIIAYCGGVVDSCIILVAVVSRLLYTSYYAFCYRSFAFVLFNAPTLCFINGTVCLYSRITKVADYIALYGGHHYVTIETTAVEFAHKDSLYVAIRGKKELNLYLSKAMELSDGAYIYLFTNTPFVGIYNANFQLQETQLNYVSEDC
Summary
Uniprot
EMBL
Pfam
PF03053
Corona_NS3b
Interpro
IPR004293
Coronavirus_Orf3b
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Multi-Pass Membrane
Topology
Length:
229
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
80.3016300000001
Exp number, first 60 AAs:
21.27789
Total prob of N-in:
0.03022
POSSIBLE N-term signal
sequence
outside
1 - 37
TMhelix
38 - 60
inside
61 - 80
TMhelix
81 - 103
outside
104 - 117
TMhelix
118 - 140
inside
141 - 229
