CoVDB Coronavirus Database (v3)   
Strain
Avian_MG812376 (Region: USA: IL;  Strain: Sparrow deltacoronavirus strain ISU690-7, complete genome.;  Date: 2017)
Gene
spike glycoprotein
Description
Annotated in NCBI,  spike glycoprotein
Location
MG812376(+):19259-22729
GenBank Accession
AWV67116.1
 

Sequence

CDS
ATGCAGAGAATTGTATTAATACTCCTCCTTCTTGGCACCACCCGTGCCAAGTTAGCTGATGATATACTCGATGTTCTTACCTTCCCAGGTGCCCATCGATTCTTTCATAAGTACAGCAATGATGCTCCACAAGCGCGTGCTGATCTCAGTGTAGGACAACTTCCAGGATTTCCCACCAGCAACGTTGCCCTATTTTCACCTCTTACTAACTCCACTCTTCCCATTAATGGGCTACACAGGAGTTACCAACCTCTTTATTTAGCATGTTTTGTACCTATACACAATAGTACTTTAAACATGCACTTACTTCCTAATGACCAGGAGTCTTATGGCTGTATTACAGACCGTATTAAGAACATGTCCCATGATGCTCTTAGACTCTTGCTTGACCTTACTGACACCACTTATGCATCTATCAAGGTGTATGGTGTTAACGACACCTTTTACATGTTTGCATGTTCTGAACAGTTGAATATATCAACTGCATTTCAGAATTCTACATTTTATTCAGCCAATAGGCAGCTCTACTGCTTTACCAATGATACCTATCTAGGTCCACTACCTGCCAATTTAACTGACATTACGATTTATCGTACTGGTCAGTTTTATGCCAATGGATACCTACTCGGTACATTACCTGTTAGCGTTACTAAAGTTAGGTTAGAGCAAGGCTCACTACCAGCAAATTCTGCGTATTATGCCCTAGCCAACCTAACCGACACTTTAATAACGCTCACCAATACCACTATTTCACGGGTCACTTTCTGTGACAATGACACAATCAGTAGTATAGCCTGTCAGCGTTCCACACATTCACTCGCTGATGGCTTTTACTCACTTTCTCCACAGGGCTCCCAAAACTATGTGAGAACTGTTGTTACACTACCTAAACTTCAGGAAGTTGAAATTGTAAAAATTACAATTACTGCAGATTTTAACTATGGTGAACCCAGAATCACCTCTTTCACTATAAATGGTAATGACACCTACTGTGTCACTAAACCATATTTTCATATACAAGTTAGTCTTGGCTGCAGTGGTTGCCAACTATCTTTTGGCGCCGACACCTGCAGCTTTGACATAAACTCACTCAATAATGGCATGTCCTTCACTCAGCTTTGCATAAGCAAAAATTCTGGCACATGCTCTAACTTAATATATGCCACTTCCGCATGGCGCTACCGCATAGGTAAAATTTATTTTACCTCTGTAGAGGGTCAGGCCCACACTGGGACGCGGCATACCAGCCCTTCAGCTATTGACACCTCCACTATTGTCACAGGTGTTTGCACTGACTATACCATTTACGGTATATCAGGCACAGGTGTCATACATGAATCTGAATTACAGTTACATAATGGTATAGCTTTTACCTCCCCCACTGGAGGGCTATATGCCTTTAAAAATACGACTACTGACAAGGCTTATCAAGTCTTACCTTGTGAAACCTCCTCTCAAGTAGTCGTTGTTAACAACACAATTGTTGGTTCCATCACCTCAACCAACACCACACAACTTGGTTTTCACACGACCATCTCCACACCTACATTCTACTATTCCACCAATGCCACATCTTTTAACTGCACTGACCCTGTTCTATCCTATGGTCCAGTGTCAGTGTGCAGTGATGGTGCCATAGTAGAAACTTCATTACTTCAAGACACACGTCCCAGTGTTGTCTCCATTTATGATGGTGTCGTTGAAATACCATCCTCTTTTTCGCTTGGTGTTCAAACTGAATACCTTCAGATACAATCTGAGCAGGTTGTTGTTGATTGCGCACAGTATGTGTGCAATGGTAACACCCGCTGCCTTCATTTATTAGCGCAATATACCTCTGCCTGCGCTAACATAGAATCAGCTCTACATTCTAGCGCTCAGCTAGACAGTAGAGAGATTACAACCATGTTTCAGACCTCTTCGCAGTCACTAGAGCTGGCCAACATCACCAACTTTAGCGGCTCCTACAATTTTACCTCCATCCTAGCTACTAAGCTAGGTGGTAAGTCAGCCATAGAAGATCTTCTCTTCAACAAAGTTGTTACCAACGGCCTGGGTACTGTGGACCAGGATTATAAATCCTGTACTAAGGACCTAGCCGTTGCTGACTTAGTTTGCTCTCAGTATTACAATGGCATTATGGTCTTACCAGGTGTCGTTGATGCTCAGAAGATGGCAATGTATACTGGTTCCCTAACAGGAGCCATGGTCTTTGGTGGTCTTACTGCTGCAGCAGCCATACCTTTTGCCACAGCAGTACAAGCTCGTCTCAATTATGTTGCCTTGCAGACAAATGTACTCCAAGAAAACCAGAAAATTCTTGCAGAATCATTTAATCAAGCAGTTGGCAACATTTCATTAGCATTATCCTCTGTTAATGATGCTATTCAACAAACTTCTGAAGCACTCAATACAGTGGCAAATGCTATCAACAAAATTCAAACAGTTGTTAACCAGCAAGGCGAGGCACTTTCTCACCTCACTGCTCAACTGTCAAACAACTTCCAAGCTATCTCCACTTCCATTCAGGACATCTACAATCGTCTTGAGGAAGTTGAGGCTAACCAGCAAGTTGACCGCCTTATAACAGGTCGGTTAGCTGCACTTAATGCATATGTTACCCAGTTACTCAACCAGATGTCTCAAATCAGACAATCTAGGTTGCTGGCGCAACAAAAGATCAATGAATGTGTCAAGTCGCAGTCCTCCCGTTATGGGTTCTGCGGTAATGGCACACATCTCTTTTCAATAACACAAGCAGCACCTAATGGAATATTTTTCATGCATGCTGTCTTAGTGCCAACCAAATTTACTCGCGTTAATGCCTCAGCAGGTATTTGCGTTGATAACACTAAAGGCTACTCATTGCAGCCGCAACTAATACTCTACCAGTTTAATGATTCCTGGAGGGTCACACCACGTAATATGTATGAACCTCGCATTCCCAGGGCTGCGGACTTCATACCACTTGTAGATTGCAGCGTAACGTTTTATAACACTACTGCTAGTGACCTACCTAACATAATACCTGACATTGTTGATGTCAACCAAACTGTCAGTGAAATACTAGGCAATATAACATCACCCCAACCACCGAGCTGGAGTGTTGATTATTACAATAATACAATCCTCAATCTCACTTTAGAGATTGATGATCTACAAGAGCGATCTAAAAACCTGTCACTCATAGCTGACAGGCTACAGATCTACATAGACAATCTTAACAACACCCTAGTAGACCTTGAATGGCTAAACAGGGTTGAAACTTATCTTAAATGGCCCTGGTATGTTTGGCTTGCCATCTTCCTAGCCGTAGCTGCATTTGCTGCAATCCTCATAACAATCTTTCTCTGCACTGGTTGTTGTGGAGGTTGCTTTGGTTGTTGTGGTGGCTGCTTTGGCCTTTTCTCCAAGAAGAAAAGAATCAGAGACGACCAACCAACTCCCAGTTTTAAATTTAAGGAATGGTAG
Protein
MQRIVLILLLLGTTRAKLADDILDVLTFPGAHRFFHKYSNDAPQARADLSVGQLPGFPTSNVALFSPLTNSTLPINGLHRSYQPLYLACFVPIHNSTLNMHLLPNDQESYGCITDRIKNMSHDALRLLLDLTDTTYASIKVYGVNDTFYMFACSEQLNISTAFQNSTFYSANRQLYCFTNDTYLGPLPANLTDITIYRTGQFYANGYLLGTLPVSVTKVRLEQGSLPANSAYYALANLTDTLITLTNTTISRVTFCDNDTISSIACQRSTHSLADGFYSLSPQGSQNYVRTVVTLPKLQEVEIVKITITADFNYGEPRITSFTINGNDTYCVTKPYFHIQVSLGCSGCQLSFGADTCSFDINSLNNGMSFTQLCISKNSGTCSNLIYATSAWRYRIGKIYFTSVEGQAHTGTRHTSPSAIDTSTIVTGVCTDYTIYGISGTGVIHESELQLHNGIAFTSPTGGLYAFKNTTTDKAYQVLPCETSSQVVVVNNTIVGSITSTNTTQLGFHTTISTPTFYYSTNATSFNCTDPVLSYGPVSVCSDGAIVETSLLQDTRPSVVSIYDGVVEIPSSFSLGVQTEYLQIQSEQVVVDCAQYVCNGNTRCLHLLAQYTSACANIESALHSSAQLDSREITTMFQTSSQSLELANITNFSGSYNFTSILATKLGGKSAIEDLLFNKVVTNGLGTVDQDYKSCTKDLAVADLVCSQYYNGIMVLPGVVDAQKMAMYTGSLTGAMVFGGLTAAAAIPFATAVQARLNYVALQTNVLQENQKILAESFNQAVGNISLALSSVNDAIQQTSEALNTVANAINKIQTVVNQQGEALSHLTAQLSNNFQAISTSIQDIYNRLEEVEANQQVDRLITGRLAALNAYVTQLLNQMSQIRQSRLLAQQKINECVKSQSSRYGFCGNGTHLFSITQAAPNGIFFMHAVLVPTKFTRVNASAGICVDNTKGYSLQPQLILYQFNDSWRVTPRNMYEPRIPRAADFIPLVDCSVTFYNTTASDLPNIIPDIVDVNQTVSEILGNITSPQPPSWSVDYYNNTILNLTLEIDDLQERSKNLSLIADRLQIYIDNLNNTLVDLEWLNRVETYLKWPWYVWLAIFLAVAAFAAILITIFLCTGCCGGCFGCCGGCFGLFSKKKRIRDDQPTPSFKFKEW

Summary

Uniprot
A0A5C0PWA5  
EMBL
MN064712    QEJ80684.1   
Pfam
PF01601   Corona_S2
PF01600   Corona_S1
Interpro
IPR002552   Corona_S2
IPR002551   Corona_S1
ProteinModelPortal
A0A5C0PWA5  
PDB
6B7N     E-value=0.0     Score=1546     Identity=72.86%     Cov(Q)=94.03%     Cov(P)=98.19%
3D Structure

Ontologies

Subcellular Location

From MSLVP
Capsid

Topology

Length:
1156
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
50.27976
Exp number, first 60 AAs:
0.00916999999999999
Total prob of N-in:
0.00079
outside
1  -  1094
TMhelix
1095  -  1117
inside
1118  -  1156
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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