Strain
Bat_MG916904
(Region: China; Strain: Bat coronavirus BtCoV/Rh/YN2012 isolate BtCoV/Rh/YN2012_Ra13591, complete genome.; Date: 1-Jun-13)
Gene
ORF3a
Description
Annotated in NCBI,
ORF3a
Location
GenBank Accession
Sequence
CDS
ATGTTGGGTCTTTTTCAGCTACATTTGGAGCAACATATTGCTGAACATGTCGGTAACGGCAATGTTAGAGAAGTTGTTGCTCCTATACAACACATTTTATCATCAGCCAACTTTTTACTTACCAGTATTTATGTCATCTACTTTGCGCTATATAAAGCAGATTCTGTTAAGATCAATTGCCTTATGTTGATCTTGAGAGTATTAACACTTTTGTGTTATGTACCTCTTCTGCTTTATTTTGGTGCATATTTAGATGCTATTATTATCTGGTTAGTGTTGGCTGGTAGAATTGCTTATACTAGCTATTGGGCTGTTAAATATAAAAATATTGCTTTCATTTTTCTCAACACTGATAATCTTGCGTTCATTTGCGGCAAATATTGGTATTATGAGGACAAACCCTACATAGTGTTACCAGGTGGTGAGCATTTTGTTACATTTGGTCCTCATTTTGTTACTTTTGTGGTTGCTGCTGATGTTTATGTTGCATTGCGTGGTAAAATTGAAATGGATGTACCACTTACTAGATGTGTTGAGTTATTAAATGGTGCTTTTATTTATGTTTTTACCAAGGAGGCTTGTGTTGGTATTTTTAATATTTGCTCGAGCGAGTTTCAACTTTGCGAAGAGACCAATTTGACAGACGACGACGTTTGA
Protein
MLGLFQLHLEQHIAEHVGNGNVREVVAPIQHILSSANFLLTSIYVIYFALYKADSVKINCLMLILRVLTLLCYVPLLLYFGAYLDAIIIWLVLAGRIAYTSYWAVKYKNIAFIFLNTDNLAFICGKYWYYEDKPYIVLPGGEHFVTFGPHFVTFVVAADVYVALRGKIEMDVPLTRCVELLNGAFIYVFTKEACVGIFNICSSEFQLCEETNLTDDDV
Summary
Uniprot
EMBL
Pfam
PF03053
Corona_NS3b
Interpro
IPR004293
Coronavirus_Orf3b
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Multi-Pass Membrane
Topology
Length:
218
Number of predicted TMHs:
5
Exp number of AAs in TMHs:
100.88673
Exp number, first 60 AAs:
22.77766
Total prob of N-in:
0.00257
POSSIBLE N-term signal
sequence
outside
1 - 28
TMhelix
29 - 51
inside
52 - 62
TMhelix
63 - 82
outside
83 - 85
TMhelix
86 - 105
inside
106 - 111
TMhelix
112 - 129
outside
130 - 143
TMhelix
144 - 166
inside
167 - 218
