Coronavirus Database

Strain

Horse_MG996765 (Region: Switzerland: Berne; Strain: Berne virus isolate P138/72, complete genome.; Date: 1972)

Gene

nucleocapsid protein

Description

Annotated in NCBI, nucleocapsid protein

Location

MG996765(+):27314-27796

GenBank Accession

AWV66921.1

Full name

Nucleoprotein

Alternative Name

Nucleocapsid protein

CDS

ATGAATTCTATGCTTAATCCAAATGCTGTGCCATTTCAACCATCACCTCAGGTTGTTGCATTACCCATGCAATACCCATCTGGTTTTTCTTCTGGTTATCGTCGACAGCGTGACCCAGCTTTTCGTCCTATGTTTAGGCGACAAAATAATGGCAATCAGAATCGCAGCCGTCAAAATCGGCAGCGTCTTCAAAATAATAATCGGGGCAATAACCGAAATCGTAATCAGTTTAATAGGCGCCAGAATCAGCCGTCTCAAAGTATGTCATTTGAACAGCAATTGCTGTTGATGGCAAATGAAACTGCTTATGCTGCAACTTATCCATCAGACATGCAGAATATTGCCCCCACTAAATTGGTAAAGATTGCCAAAAGAGCTGCAATGCAAATTGTTTCCGGTCATGCTACCGTAGAGATATCTAATGGCACTGAAGACTCTAATCAACGAGTCGCCACCTTTACTATTAAGGTGGTTATGAATTAA

Protein

MNSMLNPNAVPFQPSPQVVALPMQYPSGFSSGYRRQRDPAFRPMFRRQNNGNQNRSRQNRQRLQNNNRGNNRNRNQFNRRQNQPSQSMSFEQQLLLMANETAYAATYPSDMQNIAPTKLVKIAKRAAMQIVSGHATVEISNGTEDSNQRVATFTIKVVMN

Function

Major structural component of virions that associates with genomic RNA.

Similarity

Belongs to the toroviruses nucleocapsid protein family.
Belongs to the torovirinae nucleoprotein family.

Keywords

Reference proteome Ribonucleoprotein RNA-binding Viral nucleoprotein Virion

Feature

chain Nucleoprotein

Uniprot

A0A3G1RFC7 P23051 O90306 A0A1X9H810 A0A481W7J0 C1J1E1 + More
Q70KL8 Q70KL9 A0A089N0X4 Q70KP5 Q70KP6 A0A097P9L0 A0A3G4S8K3 Q70KM1 Q70KM0 Q70KP7 Q70KP9 A0A239QNX7 A0A0U5AV27 U5IJ66 Q70KM3 A0A411AH25 B8YPC8 B8YPC7 J7MDP7 J7M5N3 A0A481ZL24 B8YPD3 B8YPD7 B8YPD5 B8YPD4 B8YPD6 B8YPC9 B8YPD1 B8YPD0 B8YPD2 J7M8N9 A0A513Q9V3 A7BI33 Q70KP8

Pubmed

2607340 9879765 16137782 12915570 26708248 24122107 + More
20127374 22167249 17567770

EMBL

MG996765 AWV66921.1 D00563 AF076621 AY427798 KR527150 + More
ANA57419.1 MK521914 QBJ04618.1 FJ232068 ACO48288.1 AJ575389 CAE01355.1 LC088094 AJ575388 BAU21409.1 CAE01354.1 KM036209 AIQ77662.1 AJ575362 CAE01328.1 AJ575361 CAE01327.1 KM403390 AIU41588.1 MG957145 AYU75160.1 MG957146 AJ575385 AJ575386 MG663097 AYU75164.1 CAE01351.1 CAE01352.1 QAX33470.1 AJ575387 CAE01353.1 AJ575360 CAE01326.1 AJ575358 CAE01324.1 LT900503 SNT95687.1 LC088095 BAU21415.1 JQ740198 JQ860350 AFZ75474.1 AGB05585.1 AJ575384 CAE01350.1 MG663095 MG663096 QAX33468.1 QAX33469.1 FJ555603 ACL34410.1 FJ555602 ACL34409.1 AB661450 BAM36706.1 AB661452 BAM36708.1 MH603532 QBK95471.1 FJ555608 ACL34415.1 FJ555612 ACL34419.1 FJ555610 ACL34417.1 FJ555609 ACL34416.1 FJ555611 ACL34418.1 FJ555604 ACL34411.1 FJ555606 ACL34413.1 FJ555605 ACL34412.1 FJ555607 ACL34414.1 AB661451 BAM36707.1 MK379077 QBJ02016.1 AB285125 BAF75423.1 AJ575359 CAE01325.1

Proteomes

UP000006571 UP000000355 UP000207672 UP000102793 UP000119381 UP000269215 + More
UP000138412 UP000111898

Pfam

PF11030 Nucleocapsid-N

Interpro

IPR020253 Torovirus_nucleocapsid

ProteinModelPortal

A0A3G1RFC7 P23051 O90306 A0A1X9H810 A0A481W7J0 C1J1E1 + More
Q70KL8 Q70KL9 A0A089N0X4 Q70KP5 Q70KP6 A0A097P9L0 A0A3G4S8K3 Q70KM1 Q70KM0 Q70KP7 Q70KP9 A0A239QNX7 A0A0U5AV27 U5IJ66 Q70KM3 A0A411AH25 B8YPC8 B8YPC7 J7MDP7 J7M5N3 A0A481ZL24 B8YPD3 B8YPD7 B8YPD5 B8YPD4 B8YPD6 B8YPC9 B8YPD1 B8YPD0 B8YPD2 J7M8N9 A0A513Q9V3 A7BI33 Q70KP8

KEGG

vg:3707768 vg:17603140

GO

GO:0019013 C:viral nucleocapsid
GO:0003723 F:RNA binding

From MSLVP

Capsid

From Uniprot

Virion Located inside the virion, complexed with the viral RNA. With evidence from 1 publications.

Length:

160

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0318000000000001

Exp number, first 60 AAs:

0.03096

Total prob of N-in:

0.13653

outside

1 - 160

Sequence

Summary

Ontologies

Subcellular Location

Topology