Strain

Porcine_MH006963 (Region: Mexico; Strain: Porcine epidemic diarrhea virus strain PEDV/MEX/PUE/01/2016, complete genome.; Date: 13-Mar-13)

Gene

ORF3 protein

Description

Annotated in NCBI, ORF3 protein

Location

MH006963(+):24624-25298

GenBank Accession

AVU05453.1

Sequence

CDS

ATGTTTCTTGGACTTTTTCAATACACGATTGACACAGTTGTCAAAGATGTCTCAAAGTCTGCTAACTTGTCTTTGGATGCTGTCCAAGAGTTGGAGCTCAATGTAGTTCCAATTAGACAAGCTTCAAATGTGACGGGTTTTCTTTTCACCAGTGTTTTTATCTACTTCTTTGCACTGTTTAAAGCGTCTTCTTTGAGGCGCAATTATATTATGTTGGCAGCGCGTTTTGCTGTCATTGTTCTTTATTGCCCACTTTTATATTATTGTGGTGCATTTTTAGATGCAACTATTATTTGTTGCACACTTATTGGCAGGCTTTGTTTAGTCTGCTTTTACTCCTGGCGCTATAAAAATGCGCTCTTTATTATTTTTAATACTACGACACTTTCTTTCCTCAATGGTAAAGCAGCTTATTATGACGGCAAACCCATTGTGATTTTAGAAGGTGGTGACCATTACATCACTTTTGGCAACTCTTTTGTTGCTTTTGTTAGTAGCATCGACTTGTATCTAGCTATACGTGGGCGGCAAGAAGCTGACCTACAGCTGTTGCGAACTGTTGAGCTTCTTGATGGCAAGAAGCTTTATGTCTTTTCGCAACATCAAATTGTTGGCATTACTAATGCTGCATTTGACTCAATTCAACTAGACGAGTATGCTACAATTAGTGAATGA

Protein

MFLGLFQYTIDTVVKDVSKSANLSLDAVQELELNVVPIRQASNVTGFLFTSVFIYFFALFKASSLRRNYIMLAARFAVIVLYCPLLYYCGAFLDATIICCTLIGRLCLVCFYSWRYKNALFIIFNTTTLSFLNGKAAYYDGKPIVILEGGDHYITFGNSFVAFVSSIDLYLAIRGRQEADLQLLRTVELLDGKKLYVFSQHQIVGITNAAFDSIQLDEYATISE

Summary

Uniprot

A7UG22

Pubmed

17932736 21210162 22532530 23151819

EMBL

EU054929 HQ537439 HQ537441 HQ537448 HQ537455 JN825712 + More
JQ023161 JQ664298 KC294277 MK032691 ABS89138.1 ADQ27455.1 ADQ27457.1 ADQ27464.1 ADQ27471.1 AFC98508.1 AFE85963.1 AFK09781.1 AFZ85197.1 QBO24664.1

Proteomes

UP000122353 UP000133157

Pfam

PF03053 Corona_NS3b

Interpro

IPR004293 Coronavirus_Orf3b

ProteinModelPortal

A7UG22

Ontologies

GO:0016021 C:integral component of membrane

Subcellular Location

From MSLVP

Multi-Pass Membrane

Topology

Length:

224

Number of predicted TMHs:

Exp number of AAs in TMHs:

90.8326500000001

Exp number, first 60 AAs:

19.44739

Total prob of N-in:

0.04789

POSSIBLE N-term signal

sequence

outside

1 - 40

TMhelix

41 - 63

inside

64 - 75

TMhelix

76 - 98

outside

99 - 224