Coronavirus Database

Strain

Porcine_MH603532 (Region: China; Strain: Porcine torovirus isolate HB1, complete genome.; Date: 2018)

Gene

nucleocapsid protein

Description

Annotated in NCBI, nucleocapsid protein

Location

MH603532(+):27591-28082

GenBank Accession

QBK95471.1

Full name

Nucleoprotein

Alternative Name

Nucleocapsid protein

CDS

ATGAATTCTATGCTTAATCCAAATGCTATGCCATTTCAGCCACAGCCACAAGTGGTGGCTATGCCCTTTCAATATTCTATGGGCTTTCAACCACGGTTTCGAAGGAGGCGTAACCCTGGTTTTAGACCTATGTTTCAGAGGCGCAATAATGTAAATCCAAATCGCAGCCGTCAGAATAGATCACGCACTCAAAATCAAAGACGTGGTCTCAATTCTTCACGCACACAACAGCGTGCTAATAGGCGTCAAAATAATCAGCAGTCTTTATCTTTGCCATTTGACCAACAATTACTTATGATGGCAAACGAGACAGCACTTTCTGCAACATTTCCACCTGAGTTGCAGAGTTTGGCGCCTACTAAATTAGTGAAGATTGCTAAGAGGGCTGCTATGCAGATTGTTTCTGGCCATGCCACTGTTGAAGTGTCCAGTGGAGATCAAGATACGCCTCATAAAATTGCAAATTTTACAATAAAAGTGGCTCTTAATTAA

Protein

MNSMLNPNAMPFQPQPQVVAMPFQYSMGFQPRFRRRRNPGFRPMFQRRNNVNPNRSRQNRSRTQNQRRGLNSSRTQQRANRRQNNQQSLSLPFDQQLLMMANETALSATFPPELQSLAPTKLVKIAKRAAMQIVSGHATVEVSSGDQDTPHKIANFTIKVALN

Function

Major structural component of virions that associates with genomic RNA.

Similarity

Belongs to the toroviruses nucleocapsid protein family.

Keywords

Reference proteome Ribonucleoprotein RNA-binding Viral nucleoprotein Virion

Feature

chain Nucleoprotein

Uniprot

A0A481ZL24 A0A239QNX7 C1J1E1 A0A089N0X4 Q70KP5 Q70KL8 + More
A0A411AH25 A0A097P9L0 Q70KL9 Q70KP7 Q70KM1 Q70KM0 A0A3G4S8K3 U5IJ66 Q70KP6 Q70KP9 Q70KM3 B8YPC7 J7MDP7 J7M5N3 B8YPD3 B8YPD7 B8YPD5 B8YPD4 B8YPD6 B8YPC8 B8YPD0 B8YPC9 B8YPD1 J7M8N9 A0A0U5AV27 B8YPD2 A7BI33 Q70KP8 A0A513Q9V3 A0A3G1RFC7 P23051

Pubmed

12915570 26708248 24122107 20127374 22167249 17567770 + More
2607340

EMBL

MH603532 QBK95471.1 LT900503 SNT95687.1 FJ232068 ACO48288.1 + More
KM036209 AIQ77662.1 AJ575362 CAE01328.1 AJ575389 CAE01355.1 MG663095 MG663096 QAX33468.1 QAX33469.1 KM403390 AIU41588.1 LC088094 AJ575388 BAU21409.1 CAE01354.1 AJ575360 CAE01326.1 MG957146 AJ575385 AJ575386 MG663097 AYU75164.1 CAE01351.1 CAE01352.1 QAX33470.1 AJ575387 CAE01353.1 MG957145 AYU75160.1 JQ740198 JQ860350 AFZ75474.1 AGB05585.1 AJ575361 CAE01327.1 AJ575358 CAE01324.1 AJ575384 CAE01350.1 FJ555602 ACL34409.1 AB661450 BAM36706.1 AB661452 BAM36708.1 FJ555608 ACL34415.1 FJ555612 ACL34419.1 FJ555610 ACL34417.1 FJ555609 ACL34416.1 FJ555611 ACL34418.1 FJ555603 ACL34410.1 FJ555605 ACL34412.1 FJ555604 ACL34411.1 FJ555606 ACL34413.1 AB661451 BAM36707.1 LC088095 BAU21415.1 FJ555607 ACL34414.1 AB285125 BAF75423.1 AJ575359 CAE01325.1 MK379077 QBJ02016.1 MG996765 AWV66921.1 D00563

Proteomes

UP000269215 UP000119381 UP000102793 UP000111898 UP000138412 UP000006571 + More

Pfam

PF11030 Nucleocapsid-N

Interpro

IPR020253 Torovirus_nucleocapsid

ProteinModelPortal

A0A481ZL24 A0A239QNX7 C1J1E1 A0A089N0X4 Q70KP5 Q70KL8 + More
A0A411AH25 A0A097P9L0 Q70KL9 Q70KP7 Q70KM1 Q70KM0 A0A3G4S8K3 U5IJ66 Q70KP6 Q70KP9 Q70KM3 B8YPC7 J7MDP7 J7M5N3 B8YPD3 B8YPD7 B8YPD5 B8YPD4 B8YPD6 B8YPC8 B8YPD0 B8YPC9 B8YPD1 J7M8N9 A0A0U5AV27 B8YPD2 A7BI33 Q70KP8 A0A513Q9V3 A0A3G1RFC7 P23051

KEGG

vg:17603140

GO

GO:0019013 C:viral nucleocapsid
GO:0003723 F:RNA binding

From MSLVP

Capsid

From Uniprot

Virion Located inside the virion, complexed with the viral RNA. With evidence from 1 publications.

Length:

163

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01694

Exp number, first 60 AAs:

0.01617

Total prob of N-in:

0.11953

outside

1 - 163

Sequence

Summary

Ontologies

Subcellular Location

Topology