Strain
Bat_MH687938
(Region: Viet Nam; Strain: Alphacoronavirus sp. strain VZ_AlphaCoV_16715_39_c1, complete genome.; Date: 17-Jun-14)
Gene
nucleocapsid protein
Description
Annotated in NCBI,
nucleocapsid protein
Location
GenBank Accession
Sequence
CDS
ATGGCTTCTGTAAAATTCCAACCTCGTGGTCGTTCCAAGGGACGTGTTCCTCTGTCTCTTTTTGCTCCACTTAGGGTTACTGATGAAAAACCACTTTATAAGGTCCTACCAAATAATGCCGTCCCTCAGGGAGTGGGAAATAAGGACCAACAAATTGGATACTGGGTTGAACAACAGCGCTGGAGAATGCGCCGCGGAGACCGAGTTGACCTGCCATCTAACTGGCACTTCTACTTCCTCGGTACTGGACCGCATTCTGAGTTGCCTTTCAGAAAACGCACTGATGGTGTTTTCTGGGTTGCAATCGATGGTGCTAAGACCCAGCCAACAGGCCTTGGCGTACGCAAGTCGTCTGAGAAGCCGTTGGTTCCAAAATTTAAAGTCAAACTACCCAGTAATGTGGAAATCGTTGAACCTACCACACCAAACAACTCCAGAGCTAACTCTAGGAGTCGCAGTCGTGGTGGACAGTCCAACAGCAGAGGAAATTCCCAAAACAGAGGTGATAAATCCAGAAACCAGTCCAGAAACAGGAGTCAATCTAATGATCGTGGGTCTGACTCGCGAGATGACTTAGTGGCTGCCGTTAAAAAAGCACTTGCGGACCTAGGAGTTGGTGCTGAAAAGCCTAAAAGCAAAAATCAGAGTGGTAAAAACACCCCTAAGAACAAATCTAGGTCAAGCTCTGTGCAACGTGCAGAAACCAAGGACAAACCCGAGTGGCGTCGTACTCCTAGTGGCGATGAGTCAGTTGAGGTTTGTTTTGGACCCCGTGGTGGCACCAGAAATTTTGGTAGCTCCGAATTTGTTGCTAAAGGTGTGAATGCCCCCGGTTATGCTCAGGCTGCTTCACTGGTACCTGGCGCCGCAGCACTGCTTTTTGGTGGTAATGTTGCCACCAAGGAAATGGCTGAAGGTGTTGAAATCACCTATACATACAAAATGATTGTCCCCAAGGACGACAAAAATCTTGAAATCTTTCTTGCTCAGGTTGACGCGTACAAGCTTGGCGACCCCAAGCCTCAGCGTAAAGTCAAACGTTCAAGAACCCCAACACCAAAACCTGCAACAGAGCCAATTTATGACGATGTTGCTGCAGATCCTACTTATGCTAATCTTGAGTGGGACACTACAGTGGAGGATGGTGTTGAGATGATCAACGAGGTTTTTGACACCCAGAATTGA
Protein
MASVKFQPRGRSKGRVPLSLFAPLRVTDEKPLYKVLPNNAVPQGVGNKDQQIGYWVEQQRWRMRRGDRVDLPSNWHFYFLGTGPHSELPFRKRTDGVFWVAIDGAKTQPTGLGVRKSSEKPLVPKFKVKLPSNVEIVEPTTPNNSRANSRSRSRGGQSNSRGNSQNRGDKSRNQSRNRSQSNDRGSDSRDDLVAAVKKALADLGVGAEKPKSKNQSGKNTPKNKSRSSSVQRAETKDKPEWRRTPSGDESVEVCFGPRGGTRNFGSSEFVAKGVNAPGYAQAASLVPGAAALLFGGNVATKEMAEGVEITYTYKMIVPKDDKNLEIFLAQVDAYKLGDPKPQRKVKRSRTPTPKPATEPIYDDVAADPTYANLEWDTTVEDGVEMINEVFDTQN
Summary
Uniprot
Pubmed
EMBL
ProteinModelPortal
PDB
5N4K
E-value=2e-38 Score= 135 Identity=61.17%
Cov(Q)=26.14% Cov(P)=68.67%
3D Structure
Ontologies
Subcellular Location
From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.
Topology
Length:
394
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.24672
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00803
outside
1 - 394
