Strain
Bat_MH687949
(Region: Viet Nam; Strain: Alphacoronavirus sp. strain VZ_AlphaCoV_16715_76, complete genome.; Date: 10-Jun-14)
Gene
orf3
Description
Annotated in NCBI,
orf3
Location
GenBank Accession
Sequence
CDS
ATGTTTCTTGGTCTGTTCCAGTATACTATTGATACTGCAGTTGAGCACACTGTAGAACATGCAAACTTGTCTCAAGAAGAGGCTTTGATGTTGGAAGAAAACATTGTTCCTCTGAGACAAGCTACGCATGTTACTGGATTCTTGCTCACCAGTGTTTTTGTTTACTTCTTTGCACTGTTTAAGGCTTCAAGCTACAAACGTAATTTGTTGCTATTTTTAGCACGTTTGTTGGCTTTACTATTTTATGCACCCATTTTAATATTTTGCGGTGCATATTTGGACGCTGCCATAGTAGTCACAACATTGACTTTTCGTCTATTGTTTCTGACCTACTATTCATGGCGTTATAAAACTTATAAATTTCTCATTTACAATTCTTCCACACTTATGTTTTTACATGGTCATGCCAATTATTATAATGGCAGGCCTTATGTAATGCTCGAAGGTGGAAGCCATTACGTCAAATTGGGTACTGATATAGTACCATTCGTCAGCCGAAACAATCTCTATCTTGCCATTCGTGGTAGCGATGAATCAGACATCCAACTTTTGAGGACTGTGGAGTTGTTAGATGGTAATTACCTCTACATTTTCTCCAGTTGTCAAGTTGTTGGTGTTACTAATTCAGCGTTTGAAGAGATTAAACTAGACGAATATGCTACAATTAGTGAATGA
Protein
MFLGLFQYTIDTAVEHTVEHANLSQEEALMLEENIVPLRQATHVTGFLLTSVFVYFFALFKASSYKRNLLLFLARLLALLFYAPILIFCGAYLDAAIVVTTLTFRLLFLTYYSWRYKTYKFLIYNSSTLMFLHGHANYYNGRPYVMLEGGSHYVKLGTDIVPFVSRNNLYLAIRGSDESDIQLLRTVELLDGNYLYIFSSCQVVGVTNSAFEEIKLDEYATISE
Summary
Uniprot
EMBL
Pfam
PF03053
Corona_NS3b
Interpro
IPR004293
Coronavirus_Orf3b
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Multi-Pass Membrane
Topology
Length:
224
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
66.23316
Exp number, first 60 AAs:
19.96049
Total prob of N-in:
0.00657
POSSIBLE N-term signal
sequence
outside
1 - 39
TMhelix
40 - 62
inside
63 - 68
TMhelix
69 - 91
outside
92 - 94
TMhelix
95 - 114
inside
115 - 224
