Strain

Murine_MH687970 (Region: Viet Nam; Strain: Betacoronavirus sp. strain VZ_BetaCoV_20724_34_c12, complete genome.; Date: 12-Nov-14)

Gene

nonstructural protein NS4

Description

Annotated in NCBI, nonstructural protein NS4

Location

MH687970(+):27710-28132

GenBank Accession

AYR18617.1

Sequence

CDS

ATGCTCGCCACAAGATTCCTTAGGAACTATGGTGTGCTCTTCATAGGTCCATTTATTGTTGTTTGTGTTCTAGGCGTTAGCCTATTTTTCTTGCTTAAATTAGAGGTTCATGGCCTCTATGTTGGTGATACCACACGTGTGACTGCGAAGCCAGCCACTGTGTCTTGTTCCATTAGTAAACCACTGCCACCCTTGGTTGTCACCAGCCTTGGTTTGGCAGAGTTTACTTTAGTTAGACCTACAAGCTCTTATACAAGAGTTTATTTAGGTGGTTTTAGAGGTTTTGATACTAGTACATTTGGGCCTAAAACGCTTGATTATATTACTAGTTCTAAACCTATATATAACTTAGGTCGTTCTTATAATTTTCGGCATCTGCCTAAGTTTATGAGACCTACGGCCACATGGCGATCTGGAATGTGA

Protein

MLATRFLRNYGVLFIGPFIVVCVLGVSLFFLLKLEVHGLYVGDTTRVTAKPATVSCSISKPLPPLVVTSLGLAEFTLVRPTSSYTRVYLGGFRGFDTSTFGPKTLDYITSSKPIYNLGRSYNFRHLPKFMRPTATWRSGM

Summary

Uniprot

A0A3G3NH68

EMBL

MH687975 AYR18662.1

Pfam

PF03905 Corona_NS4

Interpro

IPR005603 Corona_NS4

ProteinModelPortal

A0A3G3NH68

Ontologies

GO:0016021 C:integral component of membrane

Subcellular Location

From MSLVP

Single-Pass Membrane

Topology

Length:

140

Number of predicted TMHs:

Exp number of AAs in TMHs:

22.75187

Exp number, first 60 AAs:

22.28859

Total prob of N-in:

0.55701

POSSIBLE N-term signal

sequence

outside

1 - 9

TMhelix

10 - 32

inside

33 - 140