Strain

Murine_MH687971 (Region: Viet Nam; Strain: Betacoronavirus sp. strain VZ_BetaCoV_20724_34_c13, complete genome.; Date: 12-Nov-14)

Gene

nonstructural protein NS4

Description

Annotated in NCBI, nonstructural protein NS4

Location

MH687971(+):27883-28296

GenBank Accession

AYR18626.1

Sequence

CDS

ATGAAAAGTGATAGTGTTAAGATTATTGCTATTTTGGTTCTAACACCTATATTAGTAGCACTAGTAGTTGGAGTTCTCCTCCTTTATTCTTCCTTTGTGATATCAGGGCTAGATATAAGAAATACCACAAACCCATCCGTAAGGATTGGTACTGTGTCTTATACAATTAACACTCCGCCCGCACCAATGGTCATATATGGTGAAGACGGTCGTGTTACATTAATAAAACCCACTGACACCTATACGAGTGTCTATTTGGGTAAATTTAGAGGATTTGATACGAGTATAACAGAATTTAAAACCCCTGAGTATAGTACCAGTATCAAGCCCATTTTTACATTGGGTAAACCTTATAATTTTCGGCACTTGCCGAAGTTTAGAAGACCTACCCTCACATGGATCCCTGGGCTGTAG

Protein

MKSDSVKIIAILVLTPILVALVVGVLLLYSSFVISGLDIRNTTNPSVRIGTVSYTINTPPAPMVIYGEDGRVTLIKPTDTYTSVYLGKFRGFDTSITEFKTPEYSTSIKPIFTLGKPYNFRHLPKFRRPTLTWIPGL

Summary

Uniprot

D4QFK2

EMBL

AB551247 BAJ04697.1

Proteomes

UP000154289

Pfam

PF03905 Corona_NS4

Interpro

IPR005603 Corona_NS4

ProteinModelPortal

D4QFK2

Ontologies

GO:0016021 C:integral component of membrane

Subcellular Location

From MSLVP

Single-Pass Membrane

Topology

Length:

137

Number of predicted TMHs:

Exp number of AAs in TMHs:

23.4095700000001

Exp number, first 60 AAs:

23.26211

Total prob of N-in:

0.59357

POSSIBLE N-term signal

sequence

outside

1 - 9

TMhelix

10 - 32

inside

33 - 137