Strain
Murine_MH687977
(Region: Viet Nam; Strain: Betacoronavirus sp. strain VZ_BetaCoV_22084_10, complete genome.; Date: 4-Feb-15)
Gene
nonstructural protein NS2a
Description
Annotated in NCBI,
nonstructural protein NS2a
Location
GenBank Accession
Sequence
CDS
ATGGCTGTAGCATATGCTGACAAGCCAACTCATTTTATTAATTTTCCGCTTTCTCATTTTAATGAGTTTGTTGTGAAATTTAATAAGCTTCAAGCTGCACTACTTGAAATGGGTGTAGAATGTAAGCTACAGAATTGTCCACACATTAGTGTCACTATGCTTGATATAAAGCCAAGTGACATTAATGTGGTAGATATTGCCATTCAGGAAGTAATAGATGACTTCTGCTTTGATGATGCGGCTCTTACATTTTGTAATCCGCACATTCTAGGCAGATGCATTGTCCTGGATGTTATAGGCTGTGAAGAATTGCATGAAGATGTCGTTGAGTATATTAGAGAAAAGGGATGTGTTGCAGATCAATCCAGAAAATGGATTGCACACTGTACCATTGCACAATTCACTAACATACCCCCAAAACATCTTCCTGATGGTATAAAAGACCTACAATTCAATTGTATAATACCCATCAAACAATCTGCGCCTGCATACCTAGAATTGGTACAGCTTGGCGCGGAGAAAAAGGATGGGTTTTATAAATCACTATTTAGTCATTGGATGGGAATCAGAAGTGTTGATAAACCGCCCACTGACCATCTTGGTGCTATAATGGGCTATTGTTGTTTGGATATGATACGAGAAGAGCTACCAGAAGGGAGTCTTCCTGAGCAAGATGATGATGCTTGGAGTAAGCTCGCGTATCATTATGACAACAACTTGTGGTTTTATCGATTTGTCTTAAAAAATAGTAAATATTTTCGAAAGACAATTCGTCATAAATGTTGTAACTGTGCAGGTGAGTTTTCATACACGTCAAGTGATGAAGACTGA
Protein
MAVAYADKPTHFINFPLSHFNEFVVKFNKLQAALLEMGVECKLQNCPHISVTMLDIKPSDINVVDIAIQEVIDDFCFDDAALTFCNPHILGRCIVLDVIGCEELHEDVVEYIREKGCVADQSRKWIAHCTIAQFTNIPPKHLPDGIKDLQFNCIIPIKQSAPAYLELVQLGAEKKDGFYKSLFSHWMGIRSVDKPPTDHLGAIMGYCCLDMIREELPEGSLPEQDDDAWSKLAYHYDNNLWFYRFVLKNSKYFRKTIRHKCCNCAGEFSYTSSDED
Summary
Uniprot
Pubmed
EMBL
ProteinModelPortal
PDB
4Z5V
E-value=8e-64 Score= 199 Identity=52.26%
Cov(Q)=72.10% Cov(P)=95.67%
3D Structure
Ontologies
Subcellular Location
From MSLVP
Cytoplasm
Topology
Length:
276
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00359
Exp number, first 60 AAs:
0.00343
Total prob of N-in:
0.06727
outside
1 - 276
