Strain
Porcine_MH726396
(Region: China; Strain: Porcine epidemic diarrhea virus isolate GDS35, complete genome.; Date: 7-Dec-13)
Gene
ORF3 protein
Description
Annotated in NCBI,
ORF3 protein
Location
GenBank Accession
Sequence
CDS
ATGTTTCTTGGACTTTTTCAATACACGATTGACACAGTCGTCAAAGATGTCTCTAAGTCTGCCAACTTGTCTTCGGATGCTGTCCAAGAGTTGGAGCTTAATGTAGTTCCAATTAGACAAGCTTCAAATGTGACTGGTTTTCTTTTCACCAGTGTTTTTATTTACTTCTTTGCACTGTTTAAAGCGTCTTCTTTGAGGCGCAATTATGTTATGTTGGCAGCGCGTTTTGCTGTCATCTTTCTTTATTGCCCACTTTTATATTACTGTGGTGCATTTTTAGATGCAACTATTATCTGTTGCACACTTATTGGCAGGCTCTTTTTAGTCTGCTTTTATTCCTGGCGCTATAAAAATGCGCTCTTTATTATCTTTAATACTACTACACTTTCTTTTCTCAATGGTAAAGCAGCTTATTATGACGGCAAATCCATTGTGATTCTAGAAGGTGGTGACCATTACATCACTTTTGGCAACTCTTTCGTTGCTTTCGTTAGTAGCATTAACTTGTATCTAGCTATACGTGGGCGGCAAGAAGCTGACCTACATCTGTTGCGAACTGTTGAGCTTCTTGATGGCAAGAAGCTTTATGTCTTTTCGCAACATCAAATTGTTGGCATTACTAATGCTGCATTTGACTCAATTCAACTAGACGAGTATGCTACAATTAGTGAATGA
Protein
MFLGLFQYTIDTVVKDVSKSANLSSDAVQELELNVVPIRQASNVTGFLFTSVFIYFFALFKASSLRRNYVMLAARFAVIFLYCPLLYYCGAFLDATIICCTLIGRLFLVCFYSWRYKNALFIIFNTTTLSFLNGKAAYYDGKSIVILEGGDHYITFGNSFVAFVSSINLYLAIRGRQEADLHLLRTVELLDGKKLYVFSQHQIVGITNAAFDSIQLDEYATISE
Summary
Uniprot
EMBL
Proteomes
Pfam
PF03053
Corona_NS3b
Interpro
IPR004293
Coronavirus_Orf3b
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Multi-Pass Membrane
Topology
Length:
224
Number of predicted TMHs:
5
Exp number of AAs in TMHs:
97.17558
Exp number, first 60 AAs:
19.42519
Total prob of N-in:
0.05374
POSSIBLE N-term signal
sequence
outside
1 - 37
TMhelix
38 - 60
inside
61 - 68
TMhelix
69 - 88
outside
89 - 91
TMhelix
92 - 114
inside
115 - 120
TMhelix
121 - 138
outside
139 - 152
TMhelix
153 - 172
inside
173 - 224
