Strain
Bat_MK211369
(Region: China; Strain: Coronavirus BtSk-AlphaCoV/GX2018A, complete genome.; Date: 17-May)
Gene
nucleocapsid protein
Description
Annotated in NCBI,
nucleocapsid protein
Location
GenBank Accession
Sequence
CDS
ATGGCTTCTGTAAAATTCCAACCTCGTGGTCGTTCCAAGGGACGTGTTCCTCTGTCTCTTTTTGCTCCACTTAGGGTTACTGATGAAAAACCACTTTACAAGGTCCTACCAAATAATGCCGTCCCTCAGGGAATGGGAGATAAGGACCAACAAATTGGATACTGGGTTGAACAACAACGCTGGAGAATGCGCCGCGGAGACCGAGTTAACCTGCCATCCAACTGGCACTTCTACTTCCTCGGTACTGGACCGCATTCTGATTTGCCTTTCAGAAAACGCACTGATGGTGTTTTCTGGGTTGCAATCGATGGTGCTAAGACCCAGCCAACAGGCCTTGGCGTACGTAAGTCGTCTGAGAAACCGTTGGTTCCCAAATTTAAGAACAAATTACCCAATAATGTGGAAATCGTTGAACCTACCACACCAAACAACTCCAGAGCTAACTCATGGAGTCGTAGTCGTGGTGGACAGTCCAACAGCAGAGGAAATTCTCAAAACAGAGGTGATAAATCCAGAAACCAGTCCAGAAACAGGAGTCAATCTAATGATCGTGGGTCTGACTCGCGAGATGACTTAGTGGCTGCCGTTAAAAAAGCACTTGAAGACCTAGGAGTTGGTGCTGCAAAGCCAAAAGGCAAAAATCAGAGTGGTAAAAACACCCCTAAGAACAAATCTAGGTCAGGCTCTGTGCAACGTGCAGAAGCCAAGGACAAACCTGAGTGGCGTCGTACTCCTAGTGGCGATGAGTCAGTTGAGGTTTGTTTTGGACCCCGTGGTGGCACCAGAAATTTTGGTAGCTCCGAATTTGTTGCTAAAGGTGTGAATGCCCCCGGTTATGCTCAGGCTGCTTCACTGGTACCTGGCGCCGCAGCACTGCTTTTTGGTGGTAATGTTGCCACCAAGGAAATGGCTGAAGGTGTTGAAATCACCTATACATACAAAATGATTGTCCCCAAGGACGACAAAAATCTTGAAATCTTTCTTGCTCAGGTTGACGCTTACAAGCTCGGCGACCCCAAGCCTCAGCGTAAAGTCAAACGTTCAAGAACTCCAACACCAAAACCTGCAACAGAGCCAATTTATGACGACGTTGCTGCAGATCCTACTTATGCCAATCTTGAGTGGGACACTACAGTGGAGGATGGTGTTGAGATGATCAACGAGGTTTTTGACACCCAGAATTGA
Protein
MASVKFQPRGRSKGRVPLSLFAPLRVTDEKPLYKVLPNNAVPQGMGDKDQQIGYWVEQQRWRMRRGDRVNLPSNWHFYFLGTGPHSDLPFRKRTDGVFWVAIDGAKTQPTGLGVRKSSEKPLVPKFKNKLPNNVEIVEPTTPNNSRANSWSRSRGGQSNSRGNSQNRGDKSRNQSRNRSQSNDRGSDSRDDLVAAVKKALEDLGVGAAKPKGKNQSGKNTPKNKSRSGSVQRAEAKDKPEWRRTPSGDESVEVCFGPRGGTRNFGSSEFVAKGVNAPGYAQAASLVPGAAALLFGGNVATKEMAEGVEITYTYKMIVPKDDKNLEIFLAQVDAYKLGDPKPQRKVKRSRTPTPKPATEPIYDDVAADPTYANLEWDTTVEDGVEMINEVFDTQN
Summary
Uniprot
Pubmed
EMBL
ProteinModelPortal
PDB
5N4K
E-value=2e-44 Score= 150 Identity=59.02%
Cov(Q)=30.96% Cov(P)=81.33%
3D Structure
Ontologies
Subcellular Location
From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.
Topology
Length:
394
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.25418
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00842
outside
1 - 394
