Strain

Porcine_MK250953 (Region: China; Strain: Porcine epidemic diarrhea virus strain ZJ/ZX2018-C10, complete genome.; Date: 18-Feb)

Gene

accessory membrane protein

Description

Annotated in NCBI, accessory membrane protein

Location

MK250953(+):24791-25465

GenBank Accession

AZS27726.1

Sequence

CDS

ATGTTTCTTGGACTTTTTCAATACACGATTGACACAGTTGTCAAAGATGTCTCAAAGTCTGCTAACTTGTCTTTGGATGCTGTCYAAGAGTTGGAGCTCAATGTAGTTCCAATTAGACAAGCTTCAAATGTGACGGGTTTTCTTTTCACCAGTGTTTTCATCTACTTCTTTGCACTGTTTAAAGCGTCTTCTTTGAGGCGCAATTATATTATGTTGGCAGCGCGTTTTGCTGTCATTGTTCTTTATTGCCCACTTTTATATTATTGTGGTGCATTTTTAGATGCAACTATTATTTGTTGCACACTTATTGGCAGGCTTTGTTTAGTCTGCTTTTACTCCTGGCGCTATAAAAATGCGCTCTTTATTATTTTTAATACTACGACACTTTCTTTCCTCAATGGTAAAGCAGCTTATTATGACGGCAAATCCATTGTGATTTTAGAAGGTGGTGACCATTACATCACTTTTGGCAACTCTTTTGTTGCTTTTGTTAGTAGCATCGACTTGTATCTAGCTATACGTGGGCGGCAAGAAGCTGACCTACAGCTGTTGCGAACTGTTGAGCTTCTTGATGGCAAGAAGCTTTATGTCTTTTCGCAACATCAAATTGTTGGCATTACTAATGCTGCATTTGACTCAATTCAACTAGACGAGTATGCTACAATTAGTGAATGA

Protein

MFLGLFQYTIDTVVKDVSKSANLSLDAVXELELNVVPIRQASNVTGFLFTSVFIYFFALFKASSLRRNYIMLAARFAVIVLYCPLLYYCGAFLDATIICCTLIGRLCLVCFYSWRYKNALFIIFNTTTLSFLNGKAAYYDGKSIVILEGGDHYITFGNSFVAFVSSIDLYLAIRGRQEADLQLLRTVELLDGKKLYVFSQHQIVGITNAAFDSIQLDEYATISE

Summary

Uniprot

A7UG22

Pubmed

17932736 21210162 22532530 23151819

EMBL

EU054929 HQ537439 HQ537441 HQ537448 HQ537455 JN825712 + More
JQ023161 JQ664298 KC294277 MK032691 ABS89138.1 ADQ27455.1 ADQ27457.1 ADQ27464.1 ADQ27471.1 AFC98508.1 AFE85963.1 AFK09781.1 AFZ85197.1 QBO24664.1

Proteomes

UP000122353 UP000133157

Pfam

PF03053 Corona_NS3b

Interpro

IPR004293 Coronavirus_Orf3b

ProteinModelPortal

A7UG22

Ontologies

GO:0016021 C:integral component of membrane

Subcellular Location

From MSLVP

Multi-Pass Membrane

Topology

Length:

224

Number of predicted TMHs:

Exp number of AAs in TMHs:

90.73871

Exp number, first 60 AAs:

19.59717

Total prob of N-in:

0.04495

POSSIBLE N-term signal

sequence

outside

1 - 40

TMhelix

41 - 63

inside

64 - 75

TMhelix

76 - 98

outside

99 - 224