CoVDB Coronavirus Database (v3)   
Strain
Human_OC43_MK303619 (Region: France;  Strain: Human coronavirus OC43 isolate MDS6, complete genome.;  Date: 2013/1/22)
Gene
nucleocapsid protein
Description
Annotated in NCBI,  nucleocapsid protein
GenBank Accession
 

Sequence

CDS
ATGGCATCCTCAAGTGGGCCGATCAGTCCGACCAGTTTAGAAATGTTCAAACCAGGGGTAGAAGAGCTCAACCCAAGCAAACTGCTACTTCTCAGCAACCATCAGGAGGGAATGTTGTACCCTACTATTCTTGGTTCTCTGGAATTACTCAGTTTCAAAAGGGAAAGGAGTTTGAGTTTGCAGAAGGACAAGGTGTGCCTATTGCACCAGGAGTCCCAGCTACTGAAGCTAAGGGGTACTGGTACAGACACAACAGACGTTCTTTTAAAACAGCCGATGGCAACCAGCGTCAACTGCTGCCACGATGGTATTTTTACTATCTGGGAACAGGACCGCATGCTAAAGACCAGTACGGCACCGATATTAACGGAGTCTACTGGGTCGCTAGCAACCAGGCTGATGTCAATACCCCGGCTGACATTCTCGATCGGGACCCAAGTAGCGATGAGGCTATTCCGACTAGGTTTCCGCCTGGCACGGTACTCCCTCAGGGTTACTATGTTGAAGGCTCAGGAAGGTCTGCTCCTAATTCCAGATCTACTTCGCGCACATCCAGCAGAGCCTCTAGTGCAGGATCGCGTAGTAGAGCCAATTCTGGCAATAGAACCCCTACCTCTGGTGTAA
Protein
MASSSGPISPTSLEMFKPGVEELNPSKLLLLSNHQEGMLYPTILGSLELLSFKRERSLSLQKDKVCLLHQESQLLKLRGTGTDTTDVLLKQPMATSVNCCHDGIFTIWEQDRMLKTSTAPILTESTGSLATRLMSIPRLTFSIGTQVAMRLFRLGFRLARYSLRVTMLKAQEGLLLIPDLLRAHPAEPLVQDRVVEPILAIEPLPLV

Summary

Uniprot
Pfam
PF03187   Corona_I
Interpro
IPR004876   Corona_nucI
ProteinModelPortal

Ontologies

Subcellular Location

From MSLVP
Host nucleus. Host cytoplasm.

Topology

Length:
207
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.16838
Exp number, first 60 AAs:
0.0193
Total prob of N-in:
0.01576
outside
1  -  207
 
 
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