Strain
Hedgehog_MK679660
(Region: United Kingdom; Strain: Hedgehog coronavirus 1, complete genome.; Date: 2014)
Gene
ORF 3b
Description
Annotated in NCBI,
ORF 3b
Location
GenBank Accession
Sequence
CDS
ATGAAGGCGCCATGTTCGAGGCTTGTGTTAATAATGCTATTAGTGCTGCAGCTTCAACATACACTAACACTAAATTGTCTTACCCTGTGTTTGATAATGATGGTGTTATGTATTATGATGCTACACAAGACCGCGACGCTGCACCTAGTTATGAGCATAGTGAGTTCTACGAACTTGATGAATCCAGTTTCTCTGCTAAACCAGTTTTGGCAGAGCTACAATAGTGTCATCAACACAGCTGAGAATTGGGTAGGACCCCCTCAGTACTCTTTTTATCCTGTGCTTAACACAGCTTCTAATATCCATTGGTGTTGTACTGCAATCTTTTTGGGCCATACAGTGCAATCCATAGGTAGTACTAAAGCTCTAGCCAAACAACAGGCTGCACAGCAACTCTTAGTGAAAATTAATCATGGAGTGTAG
Protein
MKAPCSRLVLIMLLVLQLQHTLTLNCLTLCLIMMVLCIMMLHKTATLHLVMSIVSSTNLMNPVSLLNQFWQSYNSVINTAENWVGPPQYSFYPVLNTASNIHWCCTAIFLGHTVQSIGSTKALAKQQAAQQLLVKINHGV
Summary
Uniprot
Pubmed
EMBL
Proteomes
Pfam
PF00035
dsrm
Interpro
IPR014720
dsRBD_dom
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Host nucleus. Host cytoplasm.
Topology
Length:
140
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
28.33392
Exp number, first 60 AAs:
24.61186
Total prob of N-in:
0.69478
POSSIBLE N-term signal
sequence
outside
1 - 19
TMhelix
20 - 42
inside
43 - 140
