CoVDB Coronavirus Database (v3)   
Strain
Avian_MN307884 (Region: China;  Strain: Avian coronavirus;  Date: 2017)
Gene
5b protein
Description
Annotated in NCBI,  5b protein
Location
MN307884(+):25743-25991
GenBank Accession
QJE49274.1
 

Sequence

CDS
ATGAATAATAGTAAAGATAATCCTTTTCGCGGAGCAATAGCAAGAAAAGCGCGAATTTATCTGAGAGGAGGATTAGATTGTGTTTACTTTCTTAACAAAGCAGGACAAGCAGAGTCTTGTCCCGCGTGCACATCACTAGTATTCCAAGGGAAAACTTGTGAGGAGCACATAGATAATAACGATTTGTTATCATGGCGAGCGGTAAAGTATCTGGAAAGTCAGACTCACCCGCGCCAATCATCAAACTAG
Protein
MNNSKDNPFRGAIARKARIYLRGGLDCVYFLNKAGQAESCPACTSLVFQGKTCEEHIDNNDLLSWRAVKYLESQTHPRQSSN

Summary

Uniprot
A0A023PNP0  
Pubmed
26482289   
EMBL
KJ425486    KJ425490    KJ425491    KJ425495    KJ425499    KJ425501    + More
KJ435285    KT736031    AHX25908.1    AHX25944.1    AHX25953.1    AHX25989.1    AHX26025.1    AHX26043.1    AHX26169.1    AMK51944.1   
Proteomes
UP000097868    UP000102121    UP000107224    UP000120642    UP000159206    UP000163887    + More
UP000173109    UP000174151   
Pfam
PF05528   Coronavirus_5
Interpro
IPR008458   Coronavirus_5
ProteinModelPortal
A0A023PNP0  

Ontologies

Subcellular Location

From MSLVP

Topology

Length:
82
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0032
Exp number, first 60 AAs:
0.0032
Total prob of N-in:
0.50053
inside
1  -  82
 
 
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