Strain
Porcine_MN486588
(Region: China; Strain: Porcine epidemic diarrhea virus; Date: 16-Feb)
Gene
membrane protein
Description
Annotated in NCBI,
membrane protein
Location
GenBank Accession
Full name
Membrane protein
Alternative Name
E1 glycoprotein
Matrix glycoprotein
Membrane glycoprotein
Matrix glycoprotein
Membrane glycoprotein
Sequence
CDS
ATGTCTAACGGTTTTATTCCCGTTGATGAGGTGATTGAACACCTTAGAAACTGGAATTTCACATGGAATATCATACTGACGATACTACTTGTAGTGCTTCAGTATGGCCATTACAAGTACTCTGTGTTCTTGTATGGTGTCAAGATTGCTATTCTATGTATACTTTGGCCTCTTGTGTTGGCACTGTCACTTTTTGATGCATGGGCTAGCTTCCAGGTCAACTGGGTCTTTTTCGCTTTCAGCATCCTTATGGCTTGCATCACTCTTATGCTGTGGATAATGTATTTTGTCAATAGCATTCGGTTGTGGCGCAGGACACATTCTTTGTGGTCTTTCAATCCTGAAACTGACGCGCTTCTCACTATTTCTGTGATGGGCCGACAGGTCTGCATTCCAGTGCTTGGAGCACCAACTGGTGTAACGCTAACACTCCTTAGTGGTACATTGCTTGTAGAGGGCTATAAGGTTGCTACTGGCGTACAGGTAAGTCAATTGCCTGATTTCGTCACAGTCGCCAAGGCCACTACAACAATTGTCTATGGACGTGTTGGTCGTTCAGTCAATGCTTCATCTGGCACTGGTTGGGCTTTCTATGTCCGGTCAAAACACGGCGACTACTCAGCTGTGAGTAATCCGAGTGCGGTTCTCACAGATAGTGAGAAAGTGCTTCATTTAGTCTAA
Protein
MSNGFIPVDEVIEHLRNWNFTWNIILTILLVVLQYGHYKYSVFLYGVKIAILCILWPLVLALSLFDAWASFQVNWVFFAFSILMACITLMLWIMYFVNSIRLWRRTHSLWSFNPETDALLTISVMGRQVCIPVLGAPTGVTLTLLSGTLLVEGYKVATGVQVSQLPDFVTVAKATTTIVYGRVGRSVNASSGTGWAFYVRSKHGDYSAVSNPSAVLTDSEKVLHLV
Summary
Function
Component of the viral envelope that plays a central role in virus morphogenesis and assembly via its interactions with other viral proteins.
Subunit
Homomultimer. Interacts with envelope E protein in the budding compartment of the host cell, which is located between endoplasmic reticulum and the Golgi complex. Forms a complex with HE and S proteins. Interacts with nucleocapsid N protein. This interaction probably participates in RNA packaging into the virus.
Similarity
Belongs to the alphacoronaviruses M protein family.
Uniprot
Pubmed
EMBL
JN083782
JN083783
JN083785
JN083787
JN089739
JN089740
+ More
JN089741 JN089745 JN089746 JQ654496 JQ305133 JQ723736 JQ710438 JX002686 JX002691 JX188454 JX489155 JX524137 JX501325 JX647847 KF384500 KJ960178 KJ960179 KJ960180 KM609204 KM089829 KR610993 KR610994 KP765609 KX010481 KX010484 KX010488 KY698022 KY928065 MF346935 MG373542 MG373544 MF581000 MH708895 MG983755 MH061339 MH581489 MH748550 MH726384 MH726385 MH726386 MH726387 MH726388 MH726389 MH726390 MH726391 MH726392 MH726393 MH726402 MH726403 MH726404 MK690502 MK644603 MK644605 MK656470 MK656471 MK656476 MK656477 MK656478 MK656479 MK656480 MK656481 MK656482 MK656483 AER35134.1 AER35135.1 AER35137.1 AER35139.1 AER39420.1 AER39421.1 AER39422.1 AER39426.1 AER39427.1 AFD64565.1 AFF60690.1 AFJ54357.1 AFK73393.1 AFN66539.1 AFN66544.1 AFQ37601.1 AFV09317.1 AFV46347.1 AFV59247.1 AFW99001.1 AGR51645.1 AJP67405.1 AKE53208.1 AKH45341.1 AKO90058.1 AND65698.1 AND65701.1 AND65705.1 ARD24434.1 ART84253.1 ASO67380.1 AUD08949.1 AUD08951.1 AWU22295.1 AYL64495.1 AYW03312.1 AZL47213.1 AZP53860.1 AZS18881.1 QCQ19933.1 QCQ19939.1 QCQ19945.1 QCQ19951.1 QCQ19957.1 QCQ19963.1 QCQ19969.1 QCQ19975.1 QCQ19981.1 QCQ19987.1 QCQ20041.1 QCQ20047.1 QCQ20053.1 QER78626.1 QFG01703.1 QFG01715.1 QFG71733.1 QFG71734.1 QFG71739.1 QFG71740.1 QFG71741.1 QFG71742.1 QFG71743.1 QFG71744.1 QFG71745.1 QFG71746.1
JN089741 JN089745 JN089746 JQ654496 JQ305133 JQ723736 JQ710438 JX002686 JX002691 JX188454 JX489155 JX524137 JX501325 JX647847 KF384500 KJ960178 KJ960179 KJ960180 KM609204 KM089829 KR610993 KR610994 KP765609 KX010481 KX010484 KX010488 KY698022 KY928065 MF346935 MG373542 MG373544 MF581000 MH708895 MG983755 MH061339 MH581489 MH748550 MH726384 MH726385 MH726386 MH726387 MH726388 MH726389 MH726390 MH726391 MH726392 MH726393 MH726402 MH726403 MH726404 MK690502 MK644603 MK644605 MK656470 MK656471 MK656476 MK656477 MK656478 MK656479 MK656480 MK656481 MK656482 MK656483 AER35134.1 AER35135.1 AER35137.1 AER35139.1 AER39420.1 AER39421.1 AER39422.1 AER39426.1 AER39427.1 AFD64565.1 AFF60690.1 AFJ54357.1 AFK73393.1 AFN66539.1 AFN66544.1 AFQ37601.1 AFV09317.1 AFV46347.1 AFV59247.1 AFW99001.1 AGR51645.1 AJP67405.1 AKE53208.1 AKH45341.1 AKO90058.1 AND65698.1 AND65701.1 AND65705.1 ARD24434.1 ART84253.1 ASO67380.1 AUD08949.1 AUD08951.1 AWU22295.1 AYL64495.1 AYW03312.1 AZL47213.1 AZP53860.1 AZS18881.1 QCQ19933.1 QCQ19939.1 QCQ19945.1 QCQ19951.1 QCQ19957.1 QCQ19963.1 QCQ19969.1 QCQ19975.1 QCQ19981.1 QCQ19987.1 QCQ20041.1 QCQ20047.1 QCQ20053.1 QER78626.1 QFG01703.1 QFG01715.1 QFG71733.1 QFG71734.1 QFG71739.1 QFG71740.1 QFG71741.1 QFG71742.1 QFG71743.1 QFG71744.1 QFG71745.1 QFG71746.1
Proteomes
Pfam
PF01635
Corona_M
ProteinModelPortal
Ontologies
GO
Subcellular Location
From MSLVP
Topology
Length:
226
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
77.94233
Exp number, first 60 AAs:
37.37906
Total prob of N-in:
0.03365
POSSIBLE N-term signal
sequence
outside
1 - 19
TMhelix
20 - 38
inside
39 - 42
TMhelix
43 - 65
outside
66 - 74
TMhelix
75 - 97
inside
98 - 226
