Coronavirus Database

Strain

Avian_MN512434 (Region: Canada; Strain: Infectious bronchitis virus isolate IBV/Ck/Can/17-035614, complete genome.; Date: 2017)

Gene

6b protein

Description

Annotated in NCBI, 6b protein

Location

MN512434(+):27212-27436

GenBank Accession

QGM12388.1

CDS

ATGGACCTGCTGCATTTTTTGGTACATTTTGTTAGCCACTATTTCTGTGCTTTCCTATCAATCATTACAGGCATTGATTGTGATCATGTGCAATATTTTAGCTACTTTTGGTTGCTTTTTGCTTGTTGTATTGTTGCTGTGCTTTTTATTGTTGTGATTCTCATTAGTTTGCTTTATCGTAGAAGTGCAATAGTAAGAGTTAAGGAAGATAGGCATGTAGCTTAG

Protein

MDLLHFLVHFVSHYFCAFLSIITGIDCDHVQYFSYFWLLFACCIVAVLFIVVILISLLYRRSAIVRVKEDRHVA

Uniprot

G3C7A4 G3C778 A0A4Y5QAK6 G3C791 A0A0N9QX53 B3TD58 + More
A0A221J5Q3 A0A0S2ZX82 A0A516UWI1 A0A1L5YNA2 A0A346PYQ3 B3TD71 A0A221J5R3 A0A1L5YNA6 G3C7F4 A0A1P8SFN1 A0A516UWB2 X2J173 A0A0E3VZX0 A0A1X9Y2Y8 A0A516UWI5 A0A516UWE6 K7WJ36 A0A516UWE0 A0A516UWK4 A0A4Y5QS19 A0A0E3TI95 A0A516UWI4 A0A385H6J9 A0A291B667 A0A240F541 A0A516UWF2

Pubmed

21994806 31439703 26262637 18514348 28705717 26585962 + More
27938680 30126059 30714035 27793730 25712772 28495648 23166232 25843648 28917538

EMBL

GU393333 ADV71750.1 GU393331 ADV71724.1 MK878536 QCX19629.1 + More
GU393332 ADV71737.1 KR231009 ALH21121.1 EU022525 ACB87504.1 MF421319 ASM61970.1 KR822424 ALQ43525.1 MK581207 QDQ69196.1 KU556806 KU556807 APP92752.1 APP92765.1 MG021194 MH878976 AXR85442.1 AYS76115.1 EU022526 ACB87503.1 MF421320 ASM61983.1 KU556805 APP92739.1 GU393337 ADV71800.1 KX272465 APY20704.1 MK581200 MK581201 QDQ69105.1 QDQ69118.1 KJ128295 AHN49819.1 LN610099 CEK09118.1 KY805846 ARS23162.1 MK581205 QDQ69170.1 MK581203 QDQ69144.1 JX840411 AFX59337.1 MK581202 QDQ69131.1 MK581208 QDQ69209.1 MK142676 QCX41905.1 KP662631 AKC34141.1 MK581206 QDQ69183.1 MG197727 AXX83293.1 KY933089 KY933090 ATE90976.1 ATE90990.1 KX721498 APW81999.1 MK581204 QDQ69157.1

Proteomes

UP000146844 UP000138275 UP000160499 UP000097758 UP000117980 UP000138261 + More
UP000099410 UP000119508 UP000154272 UP000126934 UP000167873 UP000130326

ProteinModelPortal

G3C7A4 G3C778 A0A4Y5QAK6 G3C791 A0A0N9QX53 B3TD58 + More
A0A221J5Q3 A0A0S2ZX82 A0A516UWI1 A0A1L5YNA2 A0A346PYQ3 B3TD71 A0A221J5R3 A0A1L5YNA6 G3C7F4 A0A1P8SFN1 A0A516UWB2 X2J173 A0A0E3VZX0 A0A1X9Y2Y8 A0A516UWI5 A0A516UWE6 K7WJ36 A0A516UWE0 A0A516UWK4 A0A4Y5QS19 A0A0E3TI95 A0A516UWI4 A0A385H6J9 A0A291B667 A0A240F541 A0A516UWF2

GO

GO:0016021 C:integral component of membrane

From MSLVP

Host nucleus. Host cytoplasm.

Length:

74

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

43.11692

Exp number, first 60 AAs:

43.11473

Total prob of N-in:

0.94348

POSSIBLE N-term signal

sequence

inside

1 - 2

TMhelix

3 - 25

outside

26 - 34

TMhelix

35 - 57

inside

58 - 74

Sequence

Summary

Ontologies

Subcellular Location

Topology