Strain
Avian_MN611523
(Region: China; Strain: Hipposideros pomona bat coronavirus HKU10-related isolate 160942, complete genome.; Date: 18-Mar)
Gene
nonstructural protein NS3
Description
Annotated in NCBI,
nonstructural protein NS3
Location
GenBank Accession
Sequence
CDS
ATGACTGGCCTATTTCAAACTTCTTTTGGTGGCTCAGTTCAGGTTGGTGTGCATCATTTAGTTGAAAAATTACCGTTACCTGATGTGCATTTTCAACATGCATTGCCATTGGCCAATTTTCTCATGACTAGTGTGTTCGTAATTTACTTTGCTATGTATAAAGCCAGTTCAGTTAGAAATAACTGCATTATGTTTGGCTTTAGGCTGTTTGCAATGTTTGTGTACGCGCCACTACTATGTTACTTTGAGCTGTATGTTGATGCCGCTATTATTTTTGGTGCTCTTTACACCAGGCTTGTGTATGTTACATATTATGCCTGTAGATATAAATCACCTGCATTTGTTGTGCTTAACACTGACAGACTCGCTTTTGTTCAAGGCTATTATTGGTACTACCAGGACAACTCATACCTAACTTTGTTAGGTGGTGAGAATTTTGTCACCTTTGGTCCTAATCTTGTGCCAATTGCTGCCACTAATGACCTTTACATTGCTCTCAGAGGTAAGAAAGATGATGATGTACCACTGGTGAGGCGCGTAGAACTCATCAATGGACAATTCTTTTACATCTTTGCACAAGAGCCTGTTGTAGGTGTGGTGAACATGTGCTTCTCTGAACTTAGACTCTGTGAAGAGGTTGAAGTTCAATCTGATTAA
Protein
MTGLFQTSFGGSVQVGVHHLVEKLPLPDVHFQHALPLANFLMTSVFVIYFAMYKASSVRNNCIMFGFRLFAMFVYAPLLCYFELYVDAAIIFGALYTRLVYVTYYACRYKSPAFVVLNTDRLAFVQGYYWYYQDNSYLTLLGGENFVTFGPNLVPIAATNDLYIALRGKKDDDVPLVRRVELINGQFFYIFAQEPVVGVVNMCFSELRLCEEVEVQSD
Summary
Uniprot
EMBL
Pfam
PF03053
Corona_NS3b
Interpro
IPR004293
Coronavirus_Orf3b
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Multi-Pass Membrane
Topology
Length:
218
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
58.8374199999999
Exp number, first 60 AAs:
21.80921
Total prob of N-in:
0.00453
POSSIBLE N-term signal
sequence
outside
1 - 28
TMhelix
29 - 51
inside
52 - 63
TMhelix
64 - 86
outside
87 - 218
