Strain
Avian_MN611525
(Region: China; Strain: Hipposideros pomona bat coronavirus CHB25 isolate CHB0025, complete genome.; Date: 18-Mar)
Gene
nonstructural protein NS3
Description
Annotated in NCBI,
nonstructural protein NS3
Location
GenBank Accession
Sequence
CDS
ATGGAAACAGGACTGTTTCAAACGCACTTGGTGCCTGCAGTGCAAAAAGTTAAGCAACTTGTTGATCGAATGCCTATCCCTGACGTTCAATTTCAGCATGCGTTGCCCATTTCAAATTTTCTATTCACAAGCATTTTTGTAGTTTACTTTGCCCTTTACAAGGCAAAATCAGTTAAAAATAACTGTATTTTGCTTTGTTTGAGGTTAGTTGCTATGTTCTTTTATGCACCACTGCTATGTTATTTTCAACTGTACGTAGATGCGGTGCTGGTGTTTGTTGTTCTCTACATTAGGTTAATGTACGTTGTTTATTGGTCTTGCCGGTATCGTACCTTTGCTTTTATTGTGCTTAACACTGACAAACTCGCCTTTGTGCAGGGCTATTATTGGTACTATAATGACACTTCTTATATCACTCTTCAGGGTGGTGAGAATTTTCTCATACTAGGTACTAAGTTAGTGCCCTTTGCATTGGCGCATGACATTTACATAGCTCTTCGTGGTAAAAAGGATGAGGACGTTCCATTGGTGAGGCGCGTAGAACTCATTAATGGACAATTCTTTTATATTTTTGCCCAAGAACCTGTTGTAGGTGTTGTTAACATGTCCTTTAGCGAAATTCGCTTGTGTGAGGATGTGGAAATTTCGACTCAGTAA
Protein
METGLFQTHLVPAVQKVKQLVDRMPIPDVQFQHALPISNFLFTSIFVVYFALYKAKSVKNNCILLCLRLVAMFFYAPLLCYFQLYVDAVLVFVVLYIRLMYVVYWSCRYRTFAFIVLNTDKLAFVQGYYWYYNDTSYITLQGGENFLILGTKLVPFALAHDIYIALRGKKDEDVPLVRRVELINGQFFYIFAQEPVVGVVNMSFSEIRLCEDVEISTQ
Summary
Uniprot
EMBL
Pfam
PF03053
Corona_NS3b
Interpro
IPR004293
Coronavirus_Orf3b
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Multi-Pass Membrane
Topology
Length:
218
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
74.9652899999999
Exp number, first 60 AAs:
21.91831
Total prob of N-in:
0.00211
POSSIBLE N-term signal
sequence
outside
1 - 30
TMhelix
31 - 53
inside
54 - 59
TMhelix
60 - 79
outside
80 - 82
TMhelix
83 - 105
inside
106 - 218
