Strain

Human_2019-nCoV_MN908947 (Region: China; Strain: Wuhan seafood market pneumonia virus isolate Wuhan-Hu-1, complete genome.; Date: 19-Dec)

Gene

ORF7a protein

Description

Annotated in NCBI, ORF7a protein

Location

MN908947(+):27394-27759

GenBank Accession

QHD43421.1

Sequence

CDS

ATGAAAATTATTCTTTTCTTGGCACTGATAACACTCGCTACTTGTGAGCTTTATCACTACCAAGAGTGTGTTAGAGGTACAACAGTACTTTTAAAAGAACCTTGCTCTTCTGGAACATACGAGGGCAATTCACCATTTCATCCTCTAGCTGATAACAAATTTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACTGTTCATCAGACAAGAGGAAGTTCAAGAACTTTACTCTCCAATTTTTCTTATTGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTCAAAAGAAAGACAGAATGA

Protein

MKIILFLALITLATCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQELYSPIFLIVAAIVFITLCFTLKRKTE

Summary

Uniprot

A0A166ZLD3

Pubmed

26847648

EMBL

KU182964 ANA96033.1

Proteomes

UP000102490

Pfam

PF08779 SARS_X4

Interpro

IPR036495 SARS_X4_sf
IPR014888 SARS_X4

SUPFAM

SSF117066 SSF117066

Gene 3D

2.60.40.1550

ProteinModelPortal

A0A166ZLD3

PDB

1XAK E-value=2e-51 Score= 157 Identity=88.89% Cov(Q)=66.94% Cov(P)=97.59%

3D Structure

View Sequence and Structure Alignments

Ontologies

GO:0016021 C:integral component of membrane

Subcellular Location

From MSLVP

Host nucleus > host nucleolus. Host cytoplasm. Secreted.

Topology

Length:

121

Number of predicted TMHs:

Exp number of AAs in TMHs:

21.39087

Exp number, first 60 AAs:

0.71126

Total prob of N-in:

0.05245

outside

1 - 96

TMhelix

97 - 116

inside

117 - 121