Strain
Human_2019-nCoV_MN988713
(Region: USA: Illinois; Strain: Wuhan seafood market pneumonia virus isolate 2019-nCoV/USA-IL1/2020, complete genome.; Date: 21-Jan-20)
Gene
orf7a protein
Description
Annotated in NCBI,
orf7a protein
Location
GenBank Accession
Sequence
CDS
ATGAAAATTATTCTTTTCTTGGCACTGATAACACTCGCTACTTGTGAGCTTTATCACTACCAAGAGTGTGTTAGAGGTACAACAGTACTTTTAAAAGAACCTTGCTCTTCTGGAACATACGAGGGCAATTCACCATTTCATCCTCTAGCTGATAACAAATTTGCACTGACTTGCTTTAGCACTCAATTTGCTTTTGCTTGTCCTGACGGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACTGTTCATCAGACAAGAGGAAGTTCAAGAACTTTACTCTCCAATTTTTCTTATTGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTCAAAAGAAAGACAGAATGA
Protein
MKIILFLALITLATCELYHYQECVRGTTVLLKEPCSSGTYEGNSPFHPLADNKFALTCFSTQFAFACPDGVKHVYQLRARSVSPKLFIRQEEVQELYSPIFLIVAAIVFITLCFTLKRKTE
Summary
Uniprot
Pubmed
EMBL
Proteomes
Pfam
PF08779
SARS_X4
SUPFAM
SSF117066
SSF117066
Gene 3D
ProteinModelPortal
PDB
1XAK
E-value=2e-51 Score= 157 Identity=88.89%
Cov(Q)=66.94% Cov(P)=97.59%
3D Structure
Ontologies
Subcellular Location
From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.
Topology
Length:
121
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
21.39087
Exp number, first 60 AAs:
0.71126
Total prob of N-in:
0.05245
outside
1 - 96
TMhelix
97 - 116
inside
117 - 121
