Strain
Bat_MN996532
(Region: China; Strain: Bat coronavirus isolate RaTG13, complete genome.; Date: 24-Jul-13)
Gene
nonstructural protein NS3
Description
Annotated in NCBI,
nonstructural protein NS3
Location
GenBank Accession
Sequence
CDS
ATGGATTTGTTTATGAGAATTTTCACACTTGGAACTGTAACTTTGAAACAAGGTGAAATTAAGGATGCTACTCCTTCAGATTCTGTTCGCGCTACTGCAACGATACCGATACAAGCCTCACTCCCTTTCGGATGGCTTATTGTTGGCGTTGCATTTCTTGCTGTTTTTCAAAGCGCTTCCAAGATCATAACCCTTAAAAAGAGATGGCAACTAGCACTCTCTAAGGGTATTCACTTTATTTGCAACTTGCTGCTGCTGTTTGTAACAGTTTACTCACATCTTTTGCTCGTTGCTGCTGGTCTTGAAGCCCCATTCCTCTACCTCTACGCTTTAGTCTACTTCTTGCAGAGTATAAACTTTGTAAGAATAATAATGAGGCTTTGGCTTTGCTGGAAATGCCGTTCCAAAAACCCATTACTCTATGATGCTAACTACTTCCTTTGTTGGCATACTAATTGTTATGACTATTGTATACCTTACAATAGTGTAACTTCTTCAATTGTCATTACTTCAGGTGATGGCACAACAAGTCCTATTTCTGAACATGACTACCAGATTGGTGGTTATACTGAAAAATGGGAGTCTGGAGTAAAAGACTGTGTTGTATTACACAGTTACTTCACTTCAGATTATTACCAGCTGTACTCAACTCAATTGAGCACAGACACTGGTGTTGAACATGTTACCTTCTTCATCTACAATAAAATTGTTGATGAGCCTGAAGAACATGTCCAAATTCACACAATCGACGGTTCATCCGGAGTTGTTAATCCAGCAATGGAACCAATTTATGATGAACCGACGACGACTACTAGCGTGCCTTTGTAA
Protein
MDLFMRIFTLGTVTLKQGEIKDATPSDSVRATATIPIQASLPFGWLIVGVAFLAVFQSASKIITLKKRWQLALSKGIHFICNLLLLFVTVYSHLLLVAAGLEAPFLYLYALVYFLQSINFVRIIMRLWLCWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPISEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEPEEHVQIHTIDGSSGVVNPAMEPIYDEPTTTTSVPL
Summary
Uniprot
EMBL
Proteomes
Pfam
PF11289
APA3_viroporin
Interpro
IPR024407
SARS_coronavirus_Orf3/3a
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Host nucleus > host nucleolus. Host cytoplasm. Secreted.
Topology
Length:
275
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
66.11422
Exp number, first 60 AAs:
21.82327
Total prob of N-in:
0.00574
POSSIBLE N-term signal
sequence
outside
1 - 33
TMhelix
34 - 56
inside
57 - 76
TMhelix
77 - 99
outside
100 - 102
TMhelix
103 - 125
inside
126 - 275
