Strain
Human_2049-nCoV_MT375469
(Region: USA_CT; Strain: Severe acute respiratory syndrome-related coronavirus; Date: 2020/4/7)
Gene
ORF3a protein
Description
Annotated in NCBI,
ORF3a protein
Location
GenBank Accession
Sequence
CDS
ATGGATTTGTTTATGAGAATCTTCACAATTGGAACTGTAACTTTGAAGCAAGGTGAAATCAAGGATGCTACTCCTTCAGATTTTGTTCGCGCTACTGCAACGATACCGATACAAGCCTCACTCCCTTTCGGATGGCTTATTGTTGGCGTTGCACTTCTTGCTGTTTTTCAGAGCGCTTCCAAAATCATAACCCTCAAAAAGAGATGGCAACTAGCACTCTCCAGGGGTGTTCACTTTGTTTGCAACTTGCTGTTGTTGTTTGTAACAGTTTACTCACACCTTTTGCTCGTTGCTGCTGGCCTTGAAGNCCCTTTTCTCTATCTTTATGCTTTAGTCTACTTCTTGCAGAGTATAAACTTTGTNNNNNNAATAATGAGGCTTTGGCNNNGCTGGAAATGCCGTTCCAAAAACCCATTACTTTATGATGCCAACTATTTTCTTTGCTGGCATACTAATTGTTACGACTATTGTATACCTTACAATAGTGTAACTTCTTCAATTGTCATTACTTCAGGTGATGGCACAACAAGTCCTATTTCTGAACATGACTACCAGATTGGTGGTTATACTGAAAAATGGGAATCTGGAGTAAAAGACTGTGTTGTATTACACAGTTACTTCACTTCAGACTATTACCAGCTGTACTCAACTCAATTGAGTACAGACACTGGTGTTGAACATGTTACCTTCTTCATCTACAATAAAATTGTTGATGAGCCTGAAGAACATGTCCAAATTCACACAATCGACGGTTCATCCGGAGTTGTTAATCCAGTAATGGAACCAATTTATGATGAACCGACGACGACTACTAGCGTGCCTTTGTAA
Protein
MDLFMRIFTIGTVTLKQGEIKDATPSDFVRATATIPIQASLPFGWLIVGVALLAVFQSASKIITLKKRWQLALSRGVHFVCNLLLLFVTVYSHLLLVAAGLEXPFLYLYALVYFLQSINFVXXIMRLWXXWKCRSKNPLLYDANYFLCWHTNCYDYCIPYNSVTSSIVITSGDGTTSPISEHDYQIGGYTEKWESGVKDCVVLHSYFTSDYYQLYSTQLSTDTGVEHVTFFIYNKIVDEPEEHVQIHTIDGSSGVVNPVMEPIYDEPTTTTSVPL
Summary
Uniprot
EMBL
Proteomes
Pfam
PF11289
APA3_viroporin
Interpro
IPR024407
SARS_coronavirus_Orf3/3a
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Topology
Length:
275
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
66.68518
Exp number, first 60 AAs:
21.94522
Total prob of N-in:
0.00488
POSSIBLE N-term signal
sequence
outside
1 - 33
TMhelix
34 - 56
inside
57 - 75
TMhelix
76 - 98
outside
99 - 107
TMhelix
108 - 130
inside
131 - 275
