CoVDB Coronavirus Database (v3)   
Strain
Avian_NC_011549 (Region: Hong Kong;  Strain: Thrush coronavirus HKU12-600, complete genome.;  Date: 7-Jan)
Gene
nonstructural protein
Description
Annotated in NCBI,  nonstructural protein
Location
NC_011549(+):25940-26173
GenBank Accession
YP_002308504.1
 

Sequence

CDS
ATGTTCGAGACCCTTTATTATGCAGAACTTCTTGGTCCACTTATTGACATTGAAGTTCTTGGTTTTGTAACATTTATACACTATTTCTGGCACTACCGTCCACGTAGATGCCAGCATGTTATACCGCAAGAGAGCCAGTCAGAGGGCGCTATCATGCAAACTAGGGCTGGCTACTCTTGCACAGAATCACATCTCGATAAGTGTCAGTGCAAGAAGGACACTTATACCATTTAA
Protein
MFETLYYAELLGPLIDIEVLGFVTFIHYFWHYRPRRCQHVIPQESQSEGAIMQTRAGYSCTESHLDKCQCKKDTYTI

Summary

Uniprot
B6VDX6  
Pubmed
18971277   
EMBL
FJ376620    ACJ12051.1   
Proteomes
UP000116644   
ProteinModelPortal
B6VDX6  

Ontologies

GO
GO:0016021  C:integral component of membrane

Subcellular Location

From MSLVP
Single-Pass Membrane

Topology

Length:
77
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
21.25884
Exp number, first 60 AAs:
21.25884
Total prob of N-in:
0.03185
POSSIBLE N-term signal
sequence
outside
1  -  9
TMhelix
10  -  32
inside
33  -  77
 
 
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