Coronavirus Database

Strain

Porcine_NC_022787 (Region: China; Strain: Porcine torovirus strain SH1, complete genome.; Date: 2010)

Gene

nucleocapsid phosphoprotein

Description

Annotated in NCBI, nucleocapsid phosphoprotein

Location

NC_022787(+):27614-28105

GenBank Accession

YP_008798235.1

Full name

Nucleoprotein

Alternative Name

Nucleocapsid protein

CDS

ATGAATTCTATGCTTAATCCAAATGCTATGCCATTCCAGCCACAGCCACAAGTAGTGGCTATGCCCATTCAGTATCCTATGGGCTTTCAACCACGGTTTCAAAGGAGGCGTAACCCTGGTTTTAGACCTATGTTCCAGAGGCGTAATAATTCTAATCAGAACCGCAGCCGTCAGAATAGATCACGTATTCTAAATCAACGACGTGGTCTTACATCTTCACGAAATCAACAGCGTTCCAATAGACGCCAAAATAATCAACAACCGTTGTCAATGCCATTTGACCAACAGTTACTTATGATGGCAAATGAGACAGCACTTTCTGCAACATTTCCACCTGAGTTGCAGAGTTTGGCGCCTACAAAGCTTGTGAAGATTGCTAAGAGGGGTGCTATGCAGATAGTTTCTGGTCATGCTACTGTTGAAGTGTCCAGTGGTGAGCAAGATACGCCTCATAAAATTGCAACTTTTACAATAAAAGTGGCTCTTAATTAA

Protein

MNSMLNPNAMPFQPQPQVVAMPIQYPMGFQPRFQRRRNPGFRPMFQRRNNSNQNRSRQNRSRILNQRRGLTSSRNQQRSNRRQNNQQPLSMPFDQQLLMMANETALSATFPPELQSLAPTKLVKIAKRGAMQIVSGHATVEVSSGEQDTPHKIATFTIKVALN

Function

Major structural component of virions that associates with genomic RNA.

Similarity

Belongs to the toroviruses nucleocapsid protein family.
Belongs to the torovirinae nucleoprotein family.

Keywords

Reference proteome Ribonucleoprotein RNA-binding Viral nucleoprotein Virion

Feature

chain Nucleoprotein

Uniprot

U5IJ66 A0A089N0X4 B8YPC7 B8YPC8 B8YPC9 B8YPD1 + More
B8YPD0 B8YPD2 A0A097P9L0 Q70KP5 Q70KP6 Q70KL8 A0A239QNX7 Q70KL9 C1J1E1 Q70KP7 Q70KM1 A0A3G4S8K3 Q70KM0 A0A481ZL24 A0A513Q9V3 A0A411AH25 Q70KP9 B8YPD3 B8YPD7 B8YPD5 B8YPD4 B8YPD6 A0A0U5AV27 J7MDP7 J7M5N3 Q70KM3 Q70KP8 J7M8N9 A7BI33 A0A481W7J0 A0A1X9H810 A0A3G1RFC7 P23051 O90306

Pubmed

24122107 20127374 12915570 26708248 22167249 17567770 + More
2607340 9879765 16137782

EMBL

JQ740198 JQ860350 AFZ75474.1 AGB05585.1 KM036209 AIQ77662.1 + More
FJ555602 ACL34409.1 FJ555603 ACL34410.1 FJ555604 ACL34411.1 FJ555606 ACL34413.1 FJ555605 ACL34412.1 FJ555607 ACL34414.1 KM403390 AIU41588.1 AJ575362 CAE01328.1 AJ575361 CAE01327.1 AJ575389 CAE01355.1 LT900503 SNT95687.1 LC088094 AJ575388 BAU21409.1 CAE01354.1 FJ232068 ACO48288.1 AJ575360 CAE01326.1 MG957146 AJ575385 AJ575386 MG663097 AYU75164.1 CAE01351.1 CAE01352.1 QAX33470.1 MG957145 AYU75160.1 AJ575387 CAE01353.1 MH603532 QBK95471.1 MK379077 QBJ02016.1 MG663095 MG663096 QAX33468.1 QAX33469.1 AJ575358 CAE01324.1 FJ555608 ACL34415.1 FJ555612 ACL34419.1 FJ555610 ACL34417.1 FJ555609 ACL34416.1 FJ555611 ACL34418.1 LC088095 BAU21415.1 AB661450 BAM36706.1 AB661452 BAM36708.1 AJ575384 CAE01350.1 AJ575359 CAE01325.1 AB661451 BAM36707.1 AB285125 BAF75423.1 MK521914 QBJ04618.1 KR527150 ANA57419.1 MG996765 AWV66921.1 D00563 AF076621 AY427798

Proteomes

UP000111898 UP000119381 UP000269215 UP000102793 UP000138412 UP000207672 + More
UP000006571 UP000000355

Pfam

PF11030 Nucleocapsid-N

Interpro

IPR020253 Torovirus_nucleocapsid

ProteinModelPortal

U5IJ66 A0A089N0X4 B8YPC7 B8YPC8 B8YPC9 B8YPD1 + More
B8YPD0 B8YPD2 A0A097P9L0 Q70KP5 Q70KP6 Q70KL8 A0A239QNX7 Q70KL9 C1J1E1 Q70KP7 Q70KM1 A0A3G4S8K3 Q70KM0 A0A481ZL24 A0A513Q9V3 A0A411AH25 Q70KP9 B8YPD3 B8YPD7 B8YPD5 B8YPD4 B8YPD6 A0A0U5AV27 J7MDP7 J7M5N3 Q70KM3 Q70KP8 J7M8N9 A7BI33 A0A481W7J0 A0A1X9H810 A0A3G1RFC7 P23051 O90306

KEGG

vg:17603140 vg:3707768

GO

GO:0019013 C:viral nucleocapsid
GO:0003723 F:RNA binding

From MSLVP

Host nucleus. Host cytoplasm.

From Uniprot

Virion Located inside the virion, complexed with the viral RNA. With evidence from 1 publications.

Length:

163

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00476999999999999

Exp number, first 60 AAs:

0.00409

Total prob of N-in:

0.11966

outside

1 - 163

Sequence

Summary

Ontologies

Subcellular Location

Topology