CoVDB Coronavirus Database (v3)   
Strain
Bat_NC_028824 (Region: China;  Strain: BtRf-AlphaCoV/YN2012, complete genome.;  Date: 2012)
Gene
spike glycoprotein
Description
Annotated in NCBI,  spike glycoprotein
Location
NC_028824(+):20281-23679
GenBank Accession
YP_009200735.1
 

Sequence

CDS
ATGAAATTGCTTACTGTATTAACGTTGCTAGCCTGTATTAGGTTAGTTTGTGGTTGTACAGATGTTAATTTTGATTTGTTTAAAACTATACTTTCCACTAATCGTGGTAGTATAAATGGTACTGCAGTTATTTCTGGTGCATACCCTTCAACTAATATTAGTGAATGGTTTTGTTCTGGCACTGTAGGTAGACCTAGTGGTATTGCTAAAGGTATTGGCATTTTTGCACAGACTGCTAATGTTGATTATGGTAGTGGTGGTGGTGGTTACACTTTTAGTGTCTCACCCTCTCACTCTACTAACTTGACATGGGAACTTTGGGTCCATCGTGCTTGGGGTGCTAATAAGCCAGTTACCATTAGGTTATGCAAGTGGTTCCAGGCTCTACCCTTCAACCAAACCAGTCATCAACAAGATGCTGGCCCTACTAATGCTATTGAGTGTTTAGTTAATGGCAGTTTTCCATCCCATAGTGCATTAAACTATATGTTTGGTGTAACATGGTATGAGGGACTTGTTAGGGTCATATTTCCGCCTACTGTGTTTGAGATGCAGTTGGATGGATTACAGTGGGAGATTGTGCGTTTTACTGGTCCCATTAGTGGTGGTAAGATGACACGTTTTAATGTTATAAAAGACATTTCCAGTATACTTGTTTCTACTGATGCTCATGGTGCTGTTGACAATTTTGTTTATTGTGACTCTGGCTTTGTATCTGCATTGCAATGCAAGTTGCGTCGGTTTTCTTTACCACCTGGTGTTTATTCTAACACTGAAGTTGAGTATCCTAGTGCTTTATACACAGTTGTTAGTAATATGACGTCGTGTCCAGAGCGTCCTAGTACATCTTGTACATCTAGTTACTGTCCTCTTAAACGTGCTGTCTTTTCCAATTGTATTGTTAATTATACTAGTTGGGTTTATGACTCTAGCGTTAAATCAAACTTTCAACATTTAATTTTGCCTAACGGTTTATTTAACCCTTTTATTGAATGTAATGGTTTGAATAAGATAGTAACTAATTCGTGTGTGCCAGGTTTTGTATTACGTGTTGGTCGTGGTAAGGCCTTAAATAAGACCGTTACAGTGCCTTATCTTAAAACATCTGAATGTTTTGGATGGGCTTGGAATGACCCACAGGATTCAATTTTTGACTGGTGGATAGCAGACTTTGTCTCCAGTGGCGCATATGTTTGCACTTCCAACCCTGTAGCCCCTAGAACTGGTGTGTGTATGACATATACTGTTGAGAAAACCACGTTTCAGGGTGTTTTATATGAGAGTAATTTTACATTCTCACAGTATTACAACTTACTTTATGCTGGTTCACAGCTTAAGTATGTTAGAATACTTGGAATTGTTTATGAAGTTGCTGCTTGTTTTGAAGCCTCTTATGATGTCCTTTTTGCTTCTAATTCTAGTTATGGCTTGTTATACCGTAGCTTCGATTGTAATCAAATACACATCAATGCAGAGCGTTTTAGGAGTAGATTATTACCTCAACATAATGGTACAGCTACTGCATTAGGTTGTTTGTTTAATGCTACATATGCACCTAATGACACCTTTGTTAACTGCTCAAATCCATTAGGTGATGGTTTTTGTGCGGATTTGAAAGGTACAGTTGCCGTTCGTAGAATGGGTTTTGAGGCTCATGATACAACATATGTAGCTAATGTTATTAGTGAACGCTATATTTCATTAGCTATTGACCAACAACTTGTTTTAACTGAGCAATTTTTACAGACTACTATGCCCAAGTTTAGTGTTAACTGTGAAACATACATTTGTGATGTCAGTAAGGCTTGTAAAAATCTTCTTTTTAGATATGGAGGTTTTTGCCAAAAGATTGAGGCTGACATTAGGGGTGCAGGTGTTTTACTAGATAGCGATATTAGTGAGTTATACTCCACTATAGTCGCTAAAAGTAGCTCGCTTGTACCTCAGACTGATAGATTCAATGTCTCACAGTTTTTCTTACCTAAGAACACTGCACCATCTCCACCTAGTCCTTACTCATCTAGATCTGCTATTGAAGATATTCTTTTTAGCAAGATAGAGACAACCGGACCTGGTTTTTATGGTGACTACTACAACTGCAAGAAAAATGCCATACAGGACCTTACATGTGCACAGTATCATAATGGTATACTTGTTATACCACCTATTATGGATGCTGAGACTATGGGTATGTATGGTGGTATTGCAGCTGGTGCCGTGTCACTTGGCATTTTTGGTGGTCAGGCAGCTATTGCTACATGGAATACTGCGATTGCTGGGCGTTTGAATGCGTTAGGTGTTGTGCAAAATGCTCTTGTTGATGACGTTAATAAGTTGGCTAATGGTTTTAACCAACTTACGTCGCAGGTGGGCAAATTAGCGCTATCCACATCATCAGCGTTGCAGGCCATACAAGCTGTTGTTAATCAAAATGCTGCACAAGTTGAATCTCTCGTTAGTGGTATAACTGAGAATTTTGGTGCAATTAGTACCAATTTTAAGGTCATATCACAGCGTCTTGACAAACTTGAAGCAGACGTTCAGATGGACAGACTCATTAATGGTCGTATGAATGTTCTTCAACTGTTTGTTACTAATTATAAGCTTAAAATCGCTGAACTACGTAACACACATAGGTATGTACAATCACTTATTAATGAGTGTGTGTATGCCCAGAGTTTGAGGAACGGGTTTTGTGGCCAGGGTCTACATGTCCTATCACTTATGCAAAATGCACCTAGTGGTATTATGTTTTTCCATTACTCCTTAATACCCAACAACACTATCACAGTTAAAACCACACCAGGTCTTTGTGAAAGTGATGAGATTGGTGCAAAATGCATTGTAGCGAAAAATGGAATTTTTGTTTCTGCTAATTTGAGTTATTGGCAATGGTCGCCACGTAACATTTACAAGCCAGAAAATTTGACTTTTACTAATGTAATTGCAGTTTCGCGTGGTGCTAATTACACCACCCTCAACAGAACTTTTGACATACCTGAACTTAACCAGAGTTTTCCAATTGATGAAGAATTTCGTGAGTATTTTCAGAATATGTCAAGTGAGTTGCAGGCATTAAAGAATTTGACTGCTGATATGAGTAAGCTCAACATTAGTGAGGAGATTAAGCTCATTAATGAGATCGCTCATAATGTCTCTATGATGCATGTTGAGGTTGAAAAATTTCAGAAATATGTTAACTATGTCAAGTGGGCTTGGTGGCAGTGGTTACTTATTTTCATTGCTTTAACTTTACTTGCAGGCTTGATGGTTTGGTGCTGTTTAGCTACTGGTTGTTGTGGTATGTGTGGTTGTTTAGCTGCCACATGTGCTTCTTGTTGTGATTGTAAAGGAACTAAACTTCAATCTTACGAGATTGAAAAGATCCACATTCAGTAA
Protein
MKLLTVLTLLACIRLVCGCTDVNFDLFKTILSTNRGSINGTAVISGAYPSTNISEWFCSGTVGRPSGIAKGIGIFAQTANVDYGSGGGGYTFSVSPSHSTNLTWELWVHRAWGANKPVTIRLCKWFQALPFNQTSHQQDAGPTNAIECLVNGSFPSHSALNYMFGVTWYEGLVRVIFPPTVFEMQLDGLQWEIVRFTGPISGGKMTRFNVIKDISSILVSTDAHGAVDNFVYCDSGFVSALQCKLRRFSLPPGVYSNTEVEYPSALYTVVSNMTSCPERPSTSCTSSYCPLKRAVFSNCIVNYTSWVYDSSVKSNFQHLILPNGLFNPFIECNGLNKIVTNSCVPGFVLRVGRGKALNKTVTVPYLKTSECFGWAWNDPQDSIFDWWIADFVSSGAYVCTSNPVAPRTGVCMTYTVEKTTFQGVLYESNFTFSQYYNLLYAGSQLKYVRILGIVYEVAACFEASYDVLFASNSSYGLLYRSFDCNQIHINAERFRSRLLPQHNGTATALGCLFNATYAPNDTFVNCSNPLGDGFCADLKGTVAVRRMGFEAHDTTYVANVISERYISLAIDQQLVLTEQFLQTTMPKFSVNCETYICDVSKACKNLLFRYGGFCQKIEADIRGAGVLLDSDISELYSTIVAKSSSLVPQTDRFNVSQFFLPKNTAPSPPSPYSSRSAIEDILFSKIETTGPGFYGDYYNCKKNAIQDLTCAQYHNGILVIPPIMDAETMGMYGGIAAGAVSLGIFGGQAAIATWNTAIAGRLNALGVVQNALVDDVNKLANGFNQLTSQVGKLALSTSSALQAIQAVVNQNAAQVESLVSGITENFGAISTNFKVISQRLDKLEADVQMDRLINGRMNVLQLFVTNYKLKIAELRNTHRYVQSLINECVYAQSLRNGFCGQGLHVLSLMQNAPSGIMFFHYSLIPNNTITVKTTPGLCESDEIGAKCIVAKNGIFVSANLSYWQWSPRNIYKPENLTFTNVIAVSRGANYTTLNRTFDIPELNQSFPIDEEFREYFQNMSSELQALKNLTADMSKLNISEEIKLINEIAHNVSMMHVEVEKFQKYVNYVKWAWWQWLLIFIALTLLAGLMVWCCLATGCCGMCGCLAATCASCCDCKGTKLQSYEIEKIHIQ

Summary

Uniprot
A0A240FW36  
Pubmed
28637760   
EMBL
KY967725    ASF90470.1   
Pfam
PF01601   Corona_S2
Interpro
IPR002552   Corona_S2
ProteinModelPortal
A0A240FW36  
PDB
6ACK     E-value=2e-78     Score= 281     Identity=32.17%     Cov(Q)=55.74%     Cov(P)=52.45%
3D Structure

Ontologies

GO
GO:0019031  C:viral envelope
 GO:0016021  C:integral component of membrane
 GO:0061025  P:membrane fusion
 GO:0046813  P:receptor-mediated virion attachment to host cell

Subcellular Location

From MSLVP
Capsid

Topology

Length:
1132
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
26.86176
Exp number, first 60 AAs:
0.07581
Total prob of N-in:
0.00380
outside
1  -  1070
TMhelix
1071  -  1093
inside
1094  -  1132
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号
In processing...
Login to ASFVdb
Email
Password
Please go to Regist if without an account.
If you have forgotten your password, you can once again Regist an account with a registed or new email.
Cancel Go
Change my password
Enter new password
Reenter new password
Cancel Go
Regist an account of ASFVdb
It is required that you provide your institutional e-mail address (with edu or org in the domain) as confirmation of your affiliation.
Enter email
Reenter email
First Name
Last Name
Institution
You can directly go to if with an account.
Cancel Regist
Registraion Success
Your password has been sent to your email.
Please check it and login later.
Welcome to use ASFVdb.
OK