Strain
Murine_NC_032730
(Region: China; Strain: Lucheng Rn rat coronavirus isolate Lucheng-19, complete genome.; Date: 2013)
Gene
envelope protein
Description
Annotated in NCBI,
envelope protein
Location
GenBank Accession
Full name
Envelope small membrane protein
Sequence
CDS
ATGTTACCTTCATTTTTGAGAGTTTTCAATGATGAGGGCCTTGTTCTTAGCGTTTTATTCTGGTTTTTGTTTATTATTGTGTTGTTGTTGTTTTCAATAGCCATGCTAAAAACAATTCAATTAGTTGGTGTTTGTTGCTCTCTTACAAATAAGGTTATTGTTCTTCCTGTTAAGGGTGTTTATCACCTTTATCAAGATTATTACAAAATAGAGCCATTGCCTATGTTTGAAGTTTGA
Protein
MLPSFLRVFNDEGLVLSVLFWFLFIIVLLLFSIAMLKTIQLVGVCCSLTNKVIVLPVKGVYHLYQDYYKIEPLPMFEV
Summary
Function
Plays a central role in virus morphogenesis and assembly. Acts as a viroporin and self-assembles in host membranes forming pentameric protein-lipid pores that allow ion transport. Also plays a role in the induction of apoptosis.
Subunit
Homopentamer. Interacts with membrane protein M in the budding compartment of the host cell, which is located between endoplasmic reticulum and the Golgi complex. Interacts with Nucleoprotein.
Similarity
Belongs to the alphacoronaviruses E protein family.
Uniprot
Pubmed
Pfam
PF02723
NS3_envE
Interpro
IPR003873
NS3/E
ProteinModelPortal
Ontologies
GO
Subcellular Location
From MSLVP
Host nucleus. Host cytoplasm.
From Uniprot
Host Golgi apparatus membrane
The cytoplasmic tail functions as a Golgi complex-targeting signal. With evidence from 1 publications.
Topology
Length:
78
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
31.64497
Exp number, first 60 AAs:
30.95017
Total prob of N-in:
0.60685
POSSIBLE N-term signal
sequence
inside
1 - 12
TMhelix
13 - 35
outside
36 - 38
TMhelix
39 - 61
inside
62 - 78
