CoVDB Coronavirus Database (v3)   
Strain
Snake_NC_035465 (Region: Switzerland;  Strain: Morelia viridis nidovirus strain S14-1323_MVNV, complete genome.;  Date: 2014)
Gene
spike glycoprotein
Description
Annotated in NCBI,  spike glycoprotein
Location
NC_035465(+):24437-27298
GenBank Accession
YP_009408171.1
 

Sequence

CDS
ATGAAGTTTTTAATCTTGTTGTCATTCGTCTGTCTTGTATCATGTCAACTATTTTTAAGGTCACCACGATATCGCAACTGGGAAACCATCTATTCTATTGACAGTAAGGCTAAGACTATCACAACTCAGAGCAATTTTGACGAGTTCAAAAACTCTCCATATATCACAAGCTATGTCGACCCAGACCTCGACCCACCTGAGCTCGCCAGATTTCTCCAACACAACGTGATCACAGGCGTCTATGACGTCGATTTGCCAAAACCTGTCATCTTAGAATTAGTCAGTTTTGATAAGCCAGGAAATACATGTCAGACACTCGACCCACCAAGCTACTATCTCATCCAACACAACGGTCGAAAGTATTTCTTTAATAAGCAGGTACTCGTAGCAAGAGTATGTTTTCAAAACGGACTATGGAGACCCACAACACCAGGCGACAAAGATAAGTGTGAAAAAGTTAATCCACAAGTCTACCAAGACTTTAAACCAATTCCAACACGCAACGGGCCAGAAAGTACACCGTACTTTTATGTCGGAGTCTTACCGCAAGTCAACACCTATGCGACAAGGATCGACCGAGAGGATACATGCTGTTATTATCACGAAGCACCGATCGTCTTTTCAAGAGGTACGATCGCAACTTGTATAACCAAAACACCGTTCAAAGGTACCAGGAAGACAATCGCCAACACTCGCACCGAGTCAGTCTTCGTCTGTACGTGTCCCCAGCGCTGTACCATGTTTCTTAACACGATCACCGACGTTATTATCGTCGATGGTAGGTTGCGGCAATCGATCTATGCCCTCCGAGACCTCAACTATGTCGCACAACAGTATAAGCTATTCCAACAGCAACTCCAAGGCAAGTCAGTCACTATTAACAACAAGACTATCACCGACGAAAATATCAACATCGTCTATCATGAGTCCGAGGGCCGTTGTGGAGTTGGACGTGTTAAAGTAGGTTGTGGTCTCACCGCAATCTCATTTGTCTCAACTCTATATCTCATCCACGGACCAATGATGCCGAACTCACTGCATAAAATGTACTGTACTACAGACCGAATCGACATCCAAGATATCACAAGGCCGGCCGAAGTAACTAACTTTCAACTTCCAGCCACAGTCCAACTCGGCAACACTCGCTTCATTGCAACAGGCACCGACCCAACCACTAACCAACTCATTCTCGTTGACGATCCACAGTTCATCAGCTCTACTATGACTAACAAGCCAACAGTCGGTAGCTGCGCAACATCAGGCGGCTACAAATGGGCCGGTAACTTCTCTATCGTCAAGGATGATAAGCAAATTCCTGACTGTCCAGCTTCTAACGAAGATCAAGACTGGTCACCAGTCTGTAATGTCACCAAACTCGAACCCCTCCAGAGGGTTTATGTAGTCGACAAGAAAGTGAATGCCCAAGGAGTTAACTGTGATGACATCTGTCCATCAGCAACAGTCTGTAGTTCTAACCAAAAGACAAGTCCCATCTACCAAGCTTGCCTCGGAATCGCAAGCGATATCAACCGAATCCTCCAAGTCGAGATGCCCACCAGCGTCAAGCTGGAGGCTGTTTCGACCGGGGAGGTTGATGATGTGTTGACACTTGAATTTCAACAACTCGTCACCGAAGTGCAGGCTGTTAAGTTGCAGGAAACAGTCAGTGCAGGTCTCGGCAACGCCGACTCACTCAGACAACTATTCGAAGAGACAGTCGCCCTGCCCAAAGACGAAACATTCTTTCCTGACAGGTCACAGGCCGCTAAAGATCTGGGTCTGTTTAAGAATGCAATGTATAATAGTCCCAAAGACATGGATCACATCTCAGCGTTTCCATGGCTTGCAGGGTGGCGGTTTGGTAGGCAGATTAATGCCTTATCATATACCACTAGCATCCTAATCACAGCATATGACGAGATGCAAAAGACAGTCAACTCTAACTTCCAAGGGCTTGCAACAGCAATCAAAGCAGTCAACAACCAAGTTAAAGCCAACTACGAAGCAGTCACAACACTCTACCAGCTCATCAAACAGACACACGACGCCTATGGCAACGATTTGCGTAAGGTCGGCTTTCAGTTGTCCGAGGTTGAGTATATGGTAGCTAAGTTGGCACTTATCAACCAGTACTTTACCAAAGTATTGTCTAGGCAGACTCAAATCGTCACCGAATCACAACTGTTCGACCTCCGAGTTGGAACTTGTCGTAGCCGTAGTCCAACATGTTTTGGAGGCCAAGGCACCTACATCTCACACGCCGAGTTCGAAACGCCACGACAACGTGTCTTAATTATCAACTATCTCGGCAGTAAAGAGAGGTGTAAGCAGATCTTTACCGCTAACAAGATCTGTACCGGTAGGGGTTTAGCTCAGGTTGCACCTTTTGGTTGTAGGTTTGAAGTCGAGGATATTGGAGACCCACCTGTCTTGACAAATTATCTCAACGGAGGTCCATGTCACGCACCGCTCATCAACATCCAAGACTGTCAATTACCAGAGACCGACCTCCAGAAGCTCCAGCTCGATAACTACCAAGAGTCGCTCGAGTTGGGCTTTCGTGAGGTTAATTATACAAAAATCCAATTTATCGAGAAGATTGCCAACATCTCCAAGTTTAACACCGAAGTCAACAAGATCATCGACAGTACAAGGGCTGTTAAGTCTCTCAACGAAATCGTTTCTGAGACAGTCATGTTATCAATCAAGAACGTGCTCGCTCAAATCAACGCCTGGAGTATCTGGGATATTGCTAAGTGGTTTTTAATCGCTTTTGCAATTGCTGTTGTTGGCATGTTTGTGGTTTCAGCTCTTAAGTTTGTCGCAGCAATCTTTATCGCAGTGAAAACAAACAAGTCATGA
Protein
MKFLILLSFVCLVSCQLFLRSPRYRNWETIYSIDSKAKTITTQSNFDEFKNSPYITSYVDPDLDPPELARFLQHNVITGVYDVDLPKPVILELVSFDKPGNTCQTLDPPSYYLIQHNGRKYFFNKQVLVARVCFQNGLWRPTTPGDKDKCEKVNPQVYQDFKPIPTRNGPESTPYFYVGVLPQVNTYATRIDREDTCCYYHEAPIVFSRGTIATCITKTPFKGTRKTIANTRTESVFVCTCPQRCTMFLNTITDVIIVDGRLRQSIYALRDLNYVAQQYKLFQQQLQGKSVTINNKTITDENINIVYHESEGRCGVGRVKVGCGLTAISFVSTLYLIHGPMMPNSLHKMYCTTDRIDIQDITRPAEVTNFQLPATVQLGNTRFIATGTDPTTNQLILVDDPQFISSTMTNKPTVGSCATSGGYKWAGNFSIVKDDKQIPDCPASNEDQDWSPVCNVTKLEPLQRVYVVDKKVNAQGVNCDDICPSATVCSSNQKTSPIYQACLGIASDINRILQVEMPTSVKLEAVSTGEVDDVLTLEFQQLVTEVQAVKLQETVSAGLGNADSLRQLFEETVALPKDETFFPDRSQAAKDLGLFKNAMYNSPKDMDHISAFPWLAGWRFGRQINALSYTTSILITAYDEMQKTVNSNFQGLATAIKAVNNQVKANYEAVTTLYQLIKQTHDAYGNDLRKVGFQLSEVEYMVAKLALINQYFTKVLSRQTQIVTESQLFDLRVGTCRSRSPTCFGGQGTYISHAEFETPRQRVLIINYLGSKERCKQIFTANKICTGRGLAQVAPFGCRFEVEDIGDPPVLTNYLNGGPCHAPLINIQDCQLPETDLQKLQLDNYQESLELGFREVNYTKIQFIEKIANISKFNTEVNKIIDSTRAVKSLNEIVSETVMLSIKNVLAQINAWSIWDIAKWFLIAFAIAVVGMFVVSALKFVAAIFIAVKTNKS

Summary

Uniprot
A0A0U1UZ37  
EMBL
KJ473810    AIA62271.1   
Proteomes
UP000144177   
Pfam
PF01600   Corona_S1
PF01601   Corona_S2
Interpro
IPR002551   Corona_S1
IPR002552   Corona_S2
ProteinModelPortal
A0A0U1UZ37  

Ontologies

GO
GO:0019031  C:viral envelope
 GO:0046813  P:receptor-mediated virion attachment to host cell
 GO:0016021  C:integral component of membrane
 GO:0019064  P:fusion of virus membrane with host plasma membrane

Subcellular Location

From MSLVP
Capsid

Topology

Length:
953
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
24.06836
Exp number, first 60 AAs:
0.41096
Total prob of N-in:
0.01564
outside
1  -  925
TMhelix
926  -  948
inside
949  -  953
 
 
Copyright@ 2018-2023    Any Comments and suggestions mail to:  zhuzl@cqu.edu.cn, mg@cau.edu.cn   渝ICP备19006517号

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