Strain
Porcine_NC_038861
(Region: USA:Indiana; Strain: Transmissible gastroenteritis virus complete genome, genomic RNA.; Date: )
Gene
replicase
Description
Annotated in NCBI,
replicase
Location
GenBank Accession
Full name
Replicase polyprotein 1a
Alternative Name
ORF1a polyprotein
Sequence
CDS
ATGAGTTCCAAACAATTCAAGATCCTTGTTAATGAGGACTATCAAGTCAACGTGCCTAGTCTTCCTATTCGTGACGTGTTACAGGAAATTAAGTACTGCTACCGTAATGGATTTGAGGGCTATGTTTTCGTACCAGAATACTGTCGTGACCTAGTTGATTGCGATCGTAAGGATCACTACGTCATTGGTGTTCTTGGTAACGGAGTAAGTGATCTTAAACCTGTTCTTCTTACCGAACCCTCCGTCATGTTGCAAGGCTTTATTGTTAGAGCTAACTGCAATGGCGTTCTTGAGGACTTTGACCTTAAAATTGCTCGCACTGGCAGAGGTGCCATATATGTTGATCAATACATGTGTGGTGCTGATGGAAAACCAGTCATTGAAGGCGATTTTAAGGACTACTTCGGTGATGAAGACATCATTGAATTTGAAGGAGAGGAGTACCATTGCGCTTGGACAACTGTGCGCGATGAGAAACCGCTGAATCAGCAAACTCTCTTTACCATTCAGGAAATCCAATACAATCTGGACATTCCTCATAAATTGCCAAACTGTGCTACTAGACATGTAGCACCACCAGTCAAAAAGAACTCTAAAATAGTTCTGTCTGAAGATTACAAGAAGCTTTATGATATCTTCGGATCACCCTTTATGGGAAATGGTGACTGTCTTAGCAAATGCTTTGACACTCTTCATTTTATCGCTGCTACTCTTAGATGCCCGTGTGGTTCTGAAAGTAGCGGCGTTGGAGATTGGACTGGTTTTAAGACTGCCTGTTGTGGTCTTTCTGGCAAAGTTAAGGGTGTCACTTTGGGTGATATTAAGCCTGGTGATGCTGTTGTCACTAGTATGAGCGCAGGTAAGGGAGTTAAGTTCTTTGCCAATTGTGTTCTTCAATATGCTGGTGATGTTGAAGGTGTCTCCATCTGGAAAGTTATTAAAACTTTTACAGTTGATGAGACTGTATGCACCCCTGGTTTTGAAGGCGAATTGAACGACTTCATCAAACCTGAGAGCAAATCACTAGTTGCATGCAGCGTTAAAAGAGCATTCATTACTGGTGATATTGATGATGCTGTACATGATTGTATCATTACAGGAAAATTGGATCTTAGTACCAACCTTTTTGGTAATGTTGGTCTATTATTCAAGAAGACTCCATGGTTTGTACAAAAGTGTGGTGCACTTTTTGTAGACGCTTGGAAAGTAGTAGAGGAGCTTTGTGGTTCACTCACACTTACATACAAGCAAATTTATGAAGTTGTAGCATCACTTTGCACTTCTGCTTTTACGATTGTAAACTACAAGCCAACATTTGTGGTTCCAGACAATCGTGTTAAAGATCTTGTAGACAAGTGTGTGAAAGTTCTTGTAAAAGCATTTGATGTTTTTACGCAGATTATCACAATAGCTGGTATTGAGGCCAAATGCTTTGTGCTTGGTGCTAAATACCTGTTGTTCAATAATGCACTTGTCAAACTTGTCAGTGTTAAAATCCTTGGCAAGAAGCAAAAGGGTCTTGAATGTGCATTCTTTGCTACTAGCTTGGTTGGTGCAACTGTTAATGTGACACCTAAAAGAACAGAGACTGCCACTATCAGCTTGAACAAGGTTGATGATGTTGTAGCACCAGGAGAGGGTTATATCGTCATTGTTGGTGATATGGCTTTCTACAAGAGTGGTGAATATTATTTCATGATGTCTAGTCCTAATTTTGTTCTTACTAACAATGTTTTTAAAGCAGTTAAAGTTCCATCTTATGACATCGTTTATGATGTTGATAATGATACCAAAAGCAAAATGATTGCAAAACTTGGTTCATCATTTGAATATGATGGTGATATTGATGCTGCTATTGTAAAAGTCAATGAACTACTCATTGAATTTAGGCAGCAAAGCTTGTGCTTCAGAGCTTTTAAGGACGACAAAAGCATTTTTGTTGAAGCCTATTTTAAAAAGTATAAAATGCCAGCATGCCTTGCAAAACATATTGGTTTGTGGAACATCATAAAGAAAGATTCATGTAAGAGGGGTTTTCTTAATCTCTTCAATCACTTGAATGAATTGGAAGATATCAAAGAAACTAATATTCAGGCTATTAAAAACATTCTTTGCCCTGATCCTCTTCTTGATCTGGATTATGGTGCCATTTGGTACAATTGCATGCCAGGTTGCTCTGATCCTTCAGTTTTGGGGAGTGTTCAACTTTTGATCGGTAATGGTGTGAAAGTAGTTTGTGATGGCTGCAAAGGTTTTGCTAACCAACTTTCAAAAGGTTACAACAAGCTCTGTAATGCGGCTCGCAATGATATTGAGATCGGTGGTATACCATTTTCCACTTTTAAAACACCTACAAATACTTTTATTGAAATGACAGATGCTATCTATTCAGTTATTGAACAAGGTAAGGCATTATCCTTTAGAGATGCTGATGTGCCAGTTGTAGACAATGGTACCATTTCTACTGCTGATTGGTCTGAACCCATTCTGCTTGAACCTGCTGAATATGTAAAACCAAAGAACAATGGTAATGTCATTGTTATTGCAGGTTATACATTTTATAAAGATGAGGATGAACATTTTTATCCTTATGGTTTTGGTAAAATTGTGCAGAGAATGTATAATAAAATGGGTGGTGGTGACAAAACTGTCTCATTTTCAGAAGAAGTAGATGTTCAAGAAATTGCACCTGTTACACGTGTTAAACTTGAATTCGAATTTGACAATGAAATTGTAACTGGTGTTCTTGAACGGGCTATTGGTACTAGATACAAATTTACTGGTACAACTTGGGAAGAATTTGAAGAGTCTATTTCTGAAGAACTCGATGCAATCTTTGATACTCTAGCAAACCAAGGTGTCGAACTTGAAGGTTACTTCATTTATGACACTTGTGGTGGCTTTGATATAAAAAATCCAGATGGTATTATGATCTCTCAGTATGATATCAATATTACTGCTGATGAAAAATCAGAAGTTAGTGCATCAAGTGAAGAAGAAGAAGTTGAATCTGTTGAAGAAGATCCTGAGAATGAAATTGTAGAAGCATCTGAAGGTGCTGAAGGGACTTCTTCTCAAGAAGAGGTTGAAACAGTAGAAGTTGCAGATATTACTTCTACAGAAGAAGATGTTGACATTGTTGAAGTATCTGCTAAAGATGACCCTTGGGCTGCAGCTGTTGATGTACAAGAAGCTGAACAATTTAATCCTTCTCTACCACCTTTCAAGACAACGAATCTCAACGGAAAAATTATCCTTAAGCAAGGGGATAATAATTGTTGGATAAATGCTTGTTGCTATCAGCTTCAGGCCTTTGATTTTTTCAACAATGAAGCTTGGGAGAAATTTAAGAAAGGTGATGTCATGGACTTTGTAAACCTTTGTTATGCAGCAACAACACTAGCAAGAGGTCATTCTGGTGATGCAGAGTATCTTCTTGAACTTATGCTCAATGATTATAGCACAGCCAAGATAGTACTTGCAGCTAAGTGTGGTTGTGGTGAAAAAGAAATTGTTTTGGAAAGAGCTGTTTTTAAACTCACCCCACTTAAGGAGAGTTTTAATTATGGTGTTTGTGGTGACTGCATGCAAGTTAACACCTGTAGATTTTTAAGTGTTGAAGGCTCTGGTGTTTTTGTTCATGACATATTAAGCAAGCAAACGCCAGAAGCTATGTTTGTTGTCAAACCTGTTATGCATGCAGTTTACACTGGCACAACTCAAAATGGCCATTACATGGTTGATGATATTGAACACGGTTATTGTGTAGATGGTATGGGTATTAAACCACTTAAGAAACGGTGTTATACATCCACATTGTTCATTAATGCCAATGTAATGACTAGAGCTGAAAAACCAAAACAAGAGTTTAAAGTTGAAAAAGTAGAACAGCAACCGATAGTGGAGGAAAACAAATCCTCTATTGAAAAAGAGGAAATTCAAAGTCCTAAAAACGATGACCTTATACTTCCATTTTACAAAGCTGGTAAACTTTCCTTTTATCAGGGTGCTTTGGATGTTTTGATCAATTTCTTGGAACCTGATGTTATTGTTAATGCTGCTAATGGTGATCTTAAACACATGGGTGGTGTCGCAAGAGCCATCGATGTTTTCACTGGTGGCAAATTAACAGAACGTTCTAAGGATTATCTTAAAAAGAACAAATCTATTGCTCCTGGTAATGCTGTTTTCTTTGAAAATGTCATTGAGCATCTTAGTGTTTTGAATGCAGTTGGACCACGTAATGGTGACAGCCGAGTTGAAGCCAAACTTTGTAATGTTTACAAAGCAATTGCAAAGTGTGAAGGAAAAATATTAACACCACTTATTAGTGTTGGTATCTTTAATGTTAGACTTGAAACATCATTGCAGTGCTTACTTAAGACTGTGAATGACAGGGGATTGAATGTCTTCGTATACACTGACCAGGAGAGGCAAACTATTGAGAATTTCTTCTCTTGTTCTATCCCTGTCAATGTTACTGAGGATAATGTTAACCATGAACGTGTGTCTGTTTCTTTTGACAAAACATACGGTGAACAGCTTAAGGGCACCGTTGTCATCAAAGACAAAGATGTTACAAACCAGTTGCCTAGCGCTTTTGATGTTGGTCAAAAAGTTATTAAGGCTATTGATATAGATTGGCAAGCTCATTATGGTTTCCGTGATGCTGCTGCTTTTAGCGCTAGTAGTCATGATGCTTATAAATTTGAAGTTGTTACACATAGCAATTTCATTGTGCATAAGCAGACTGACAACAACTGTTGGATTAATGCAATTTGTCTTGCATTACAGAGACTCAAGCCACAGTGGAAATTTCCTGGTGTTAGAGGTCTCTGGAATGAATTTCTTGAGCGTAAAACACAAGGTTTTGTACATATGTTGTATCACATTTCTGGAGTAAAGAAAGGTGAGCCAGGTGATGCTGAATTAATGCTGCATAAACTTGGTGACTTGATGGACAATGATTGTGAAATCATTGTCACACACACTACAGCATGTGACAAGTGCGCAAAAGTAGAAAAGTTTGTTGGACCAGTGGTAGCAGCACCTCTTGCAATTCATGGCACTGACGAAACATGTGTGCATGGCGTTAGTGTCAATGTCAAAGTCACCCAAATTAAGGGCACTGTTGCTATTACTTCTTTGATTGGTCCTATTATTGGAGAAGTACTAGAAGCAACTGGTTATATTTGTTATAGCGGTTCTAACAGGAATGGTCATTACACCTATTACGATAACCGTAATGGATTAGTGGTTGATGCAGAAAAGGCTTACCATTTTAATAGAGACTTATTACAGGTCACAACAGCTATTGCAAGTAATTTCGTTGTCAAGAAACCACAAGCAGAGGAAAGACCTAAGAATTGTGCTTTTAACAAAGTTGCAGCATCTCCTAAGATTGTACAAGAACAAAAATTGTTGGCTATTGAAAGTGGTGCTAACTATGCTCTTACTGAATTTGGAAGATATGCTGACATGTTCTTTATGGCTGGAGATAAAATTCTTAGGTTGCTGCTTGAAGTCTTTAAATATTTGCTGGTTTTATTTATGTGTCTTAGAAGTACTAAGATGCCTAAAGTTAAAGTCAAACCACCTCTTGCATTTAAAGATTTTGGTGCTAAGGTCAGAACGCTCAATTACATGAGACAATTGAACAAACCCTCTGTCTGGCGTTACGCAAAACTAGTTTTATTGTTGATAGCAATATATAATTTCTTTTATTTGTTTGTCAGTATACCAGTAGTGCATAAATTAACATGTAACGGTGCTGTACAGGCATATAAAAATTCTAGTTTTATAAAGTCTGCAGTCTGTGGCAACTCTATTTTATGCAAAGCCTGTTTGGCTTCTTATGATGAGTTGGCTGATTTTCAACATCTCCAAGTTACTTGGGATTTCAAATCTGACCCACTATGGAACAGACTGGTACAATTGTCTTACTTTGCATTCTTGGCTGTTTTTGGTAATAACTATGTTAGGTGTTTTCTTATGTATTTTGTATCTCAGTACCTCAACCTTTGGCTTTCTTATTTTGGTTATGTAGAGTACAGTTGGTTTTTGCATGTTGTCAACTTTGAATCCATCTCAGCTGAGTTTGTGATCGTAGTTATAGTGGTTAAGGCAGTTCTCGCCCTTAAACATATTGTTTTCGCATGCTCAAACCCGTCTTGCAAAACGTGCTCTAGGACTGCAAGGCAGACACGTATTCCTATTCAAGTTGTTGTTAATGGTTCAATGAAGACTGTTTATGTTCATGCTAATGGTACTGGTAAATTCTGCAAGAAACACAATTTTTATTGTAAGAACTGTGATTCTTATGGCTTTGAAAACACATTCATCTGTGACGAAATTGTACGTGATCTCAGTAATAGTGTTAAACAAACTGTTTACGCCACTGATAGATCTCATCAAGAAGTCACAAAAGTTGAATGTTCAGATGGCTTTTACAGATTTTATGTTGGTGATGAATTCACTTCATATGACTATGATGTAAAACACAAGAAATACAGTAGTCAAGAGGTTCTCAAGAGCATGCTCTTGCTTGATGACTTCATTGTGTACAGTCCATCTGGTTCTGCTCTTGCAAATGTTAGAAATGCCTGTGTTTACTTTTCACAACTTATTGGTAAGCCTATTAAGATTGTTAACAGTGATTTGCTTGAAGACCTCTCTGTAGATTTTAAAGGGGCACTTTTTAATGCTAAAAAGAATGTAATTAAGAATTCTTTCAATGTTGATGTCTCAGAATGCAAAAATCTTGACGAATGTTACAGGGCTTGCAATCTTAATGTTTCATTTTCTACATTTGAAATGGCTGTCAACAATGCTCATAGGTTTGGTATTCTGATTACTGATCGTTCTTTTAACAATTTCTGGCCATCAAAAGTTAAGCCTGGTTCATCTGGTGTGTCGGCCATGGACATTGGTAAGTGTATGACTTCTGATGCTAAGATTGTTAATGCTAAAGTTTTAACTCAACGTGGTAAAAGTGTTGTTTGGCTTAGCCAGGATTTTGCTGCACTTAGCTCAACTGCTCAGAAAGTTTTGGTTAAAACTTTTGTAGAAGAAGGTGTCAACTTTTCACTCACATTTAATGCTGTAGGTTCAGATGATGATCTTCCTTATGAAAGATTCACTGAATCTGTGTCTCCAAAAAGTGGTTCAGGCTTTTTCGATGTAATTACACAGCTTAAACAAATTGTGATTTTGGTTTTTGTTTTTATCTTTATTTGTGGTTTGTGCTCTGTTTACAGTGTTGCTACACAGTCCTACATTGAATCTGCTGAAGGCTATGACTACATGGTTATTAAGAATGGAATTGTTCAACCTTTTGACGATACCATTTCATGTGTTCATAACACTTATAAAGGATTCGGTGACTGGTTTAAAGCTAAGTATGGTTTTATCCCTACTTTTGGTAAATCATGTCCAATTGTTGTAGGAACTGTTTTTGATCTTGAAAATATGAGACCAATTCCTGACGTGCCTGCATATGTTTCTATTGTGGGTAGATCTCTTGTTTTCGCTATTAATGCTGCTTTTGGTGTTACTAATATGTGCTATGATCATACTGGCAATGCAGTTAGTAAGGACTCTTACTTTGATACTTGTGTGTTTAATACTGCGTGCACCACTCTTACAGGTCTTGGTGGTACAATTGTATATTGTGCAAAGCAAGGTTTAGTTGAAGGTGCTAAGCTCTATAGTGATCTTATGCCAGACTATTATTATGAGCATGCTAGTGGTAACATGGTTAAATTGCCAGCAATTATTAGAGGACTTGGTCTACGTTTTGTGAAAACACAGGCTACAACTTATTGTAGAGTGGGAGAGTGCATTGATAGTAAAGCTGGTTTTTGCTTTGGTGGCGATAACTGGTTTGTCTACGACAATGAGTTTGGCAATGGATACATCTGTGGTAATTCTGTGCTAGGATTCTTTAAGAATGTCTTCAAACTCTTTAACTCTAACATGTCTGTGGTAGCTACATCTGGTGCGATGCTTGTTAACATTATTATTGCATGCTTAGCTATTGCAATGTGTTATGGTGTTCTTAAGTTTAAGAAGATTTTTGGTGATTGTACTTTCCTCATTGTTATGATCATTGTCACCCTTGTTGTGAACAATGTGTCTTATTTTGTCACTCAAAACACGTTCTTTATGATCATCTACGCCATTGTTTACTATTTTATAACAAGAAAACTTGCATACCCAGGCATTCTTGATGCTGGGTTTATTATTGCTTATATTAATATGGCTCCATGGTACGTGATTACCGCATATATCCTAGTTTTCCTCTATGACTCACTCCCTTCACTGTTTAAACTTAAAGTTTCAACAAATCTTTTTGAAGGTGATAAATTTGTGGGTAACTTTGAATCTGCTGCTATGGGTACTTTTGTTATTGACATGCGTTCATATGAAACTATTGTTAATTCTACTTCTATTGCTAGAATTAAATCATATGCTAACAGCTTCAATAAATATAAGTACTACACAGGTTCAATGGGAGAAGCTGACTACAGAATGGCTTGCTATGCTCATCTTGGTAAAGCTCTTATGGACTATTCTGTTAATAGAACAGACATGCTTTACACACCTCCTACTGTTAGTGTTAATTCTACACTTCAGTCAGGTTTGCGGAAAATGGCACAGCCTAGTGGTCTTGTAGAGCCTTGCATTGTAAGAGTTTCCTATGGTAACAATGTGCTTAATGGTTTATGGTTAGGAGATGAAGTCATTTGCCCTAGACATGTTATTGCTAGTGATACCACACGTGTTATCAACTATGAAAATGAAATGTCTAGTGTGAGACTTCACAACTTTTCAGTTTCTAAGAATAATGTGTTTTTGGGTGTTGTGTCTGCCAGATATAAGGGTGTGAATCTTGTACTTAAAGTCAACCAGGTTAATCCTAACACACCAGAACATAAATTTAAGTCTATTAAAGCTGGTGAAAGTTTTAACATTCTTGCTTGTTATGAAGGATGTCCTGGCAGTGTTTATGGTGTCAACATGAGAAGTCAAGGTACCATTAAAGGATCTTTTATAGCTGGTACTTGTGGATCAGTAGGTTATGTGTTAGAAAATGGAATTCTCTATTTTGTATACATGCATCACTTAGAACTTGGAAATGGCTCGCATGTTGGTTCCAATTTTGAAGGAGAAATGTACGGTGGTTATGAAGATCAACCTAGCATGCAATTGGAAGGTACTAATGTCATGTCATCAGATAATGTGGTTGCATTCCTATATGCTGCACTTATCAATGGTGAAAGGTGGTTTGTTACAAACACATCGATGTCATTAGAATCATACAATACATGGGCCAAAACTAACAGTTTCACAGAACTTTCTTCAACTGATGCTTTTAGCATGTTGGCTGCAAAAACTGGTCAAAGTGTTGAGAAATTACTAGATAGCATCGTAAGACTCAACAAGGGTTTTGGAGGTCGTACTATACTTTCTTATGGCTCATTGTGTGACGAGTTCACTCCAACTGAAGTCATAAGGCAAATGTATGGTGTAAATCTTCAGGCTGGTAAAGTAAAATCTTTCTTCTACCCTATTATGACTGCAATGACAATTCTCTTTGCCTTTTGGCTTGAATTCTTTATGTACACACCCTTCACTTGGATTAATCCAACTTTTGTTAGCATTGTATTGGCTGTTACAACTTTGATCTCGACGGTTTTTGTCTCTGGCATCAAACATAAGATGTTGTTCTTTATGTCTTTTGTCCTTCCTAGTGTTATCCTTGTGACAGCACACAATTTGTTCTGGGACTTTTCTTACTATGAAAGTCTTCAGTCAATTGTTGAGAATACTAACACTATGTTTTTGCCTGTTGACATGCAAGGTGTCATGCTCACAGTGTTTTGCTTTATTGTCTTTGTTACATATAGTGTTAGATTCTTCACTTGCAAACAATCATGGTTCTCACTTGCTGTGACAACTATTCTTGTGATCTTTAACATGGTTAAAATCTTTGGAACATCTGATGAACCATGGACTGAAAACCAAATTGCTTTCTGCTTTGTGAACATGCTTACTATGATTGTCAGTCTTACTACAAAGGATTGGATGGTTGTCATTGCATCATACAGAATTGCATATTATATTGTTGTATGTGTAATGCCATCTGCTTTTGTATCTGACTTTGGGTTTATGAAGTGTATTAGCATTGTTTACATGGCGTGCGGTTATTTGTTTTGTTGCTATTATGGCATTCTTTATTGGGTTAACAGATTTACATGCATGACTTGTGGTGTTTATCAATTCACTGTGTCTGCAGCTGAACTTAAATACATGACCGCTAACAACCTTTCTGCACCTAAGAACGCATATGACGCTATGATTCTTAGTGCTAAATTGATTGGTGTTGGAGGTAAGAGAAACATCAAAATTTCAACTGTACAGTCAAAACTTACAGAGATGAAATGTACCAATGTTGTCTTGCTTGGTCTTTTATCTAAAATGCATGTCGAGTCTAACTCAAAAGAGTGGAACTATTGTGTTGGACTACACAATGAGATAAACCTTTGTGACGATCCTGAAATCGTTCTTGAGAAACTGTTAGCTCTTATTGCATTCTTCTTGTCCAAACATAACACTTGTGACCTTAGCGAACTTATTGAATCATACTTTGAGAACACCACCATACTCCAGAGTGTGGCTTCAGCTTATGCTGCATTGCCTAGCTGGATTGCACTTGAAAAAGCTCGCGCTGATCTTGAAGAGGCTAAGAAAAATGATGTTAGCCCTCAAATTTTGAAGCAGCTTACTAAAGCATTTAACATTGCCAAGAGTGATTTTGAGCGCGAAGCATCAGTGCAAAAGAAACTCGACAAAATGGCTGAGCAGGCTGCAGCTAGTATGTATAAAGAAGCACGAGCTGTGGACAGAAAGTCAAAGATTGTTTCTGCTATGCATAGCCTACTTTTTGGTATGCTTAAGAAACTTGATATGTCCAGTGTCAACACTATTATTGACCAGGCTCGTAATGGTGTTCTACCTTTAAGTATCATTCCAGCTGCATCAGCTACAAGACTTGTTGTTATTACACCTAGCCTTGAAGTGTTTTCCAAGATTAGGCAAGAAAACAATGTTCATTATGCTGGTGCTATTTGGACTATTGTTGAAGTTAAAGATGCTAATGGTTCACATGTACATCTTAAGGAAGTCACCGCTGCTAATGAATTAAACCTTACTTGGCCATTGAGCATTACTTGTGAGAGAACCACAAAGCTTCAGAACAATGAAATTATGCCAGGTAAACTTAAAGAAAGAGCTGTCAGAGCGTCAGCAACTCTTGATGGTGAAGCTTTCGGCAGTGGAAAGGCTCTTATGGCATCTGAAAGTGGAAAAAGCTTTATGTATGCATTTATAGCCTCAGACAACAATCTTAAGTATGTTAAGTGGGAGAGCAATAATGATATTATACCTATTGAACTTGAAGCTCCATTGCGTTTCTATGTTGACGGCGCTAATGGTCCTGAAGTCAAGTATTTGTATTTTGTCAAGAATTTAAACACTCTTAGACGTGGTGCCGTTCTTGGTTATATCGGTGCAACAGTTCGTCTGCAAGCTGGTAAACCCACTGAACATCCATCTAACAGTAGTTTATTGACATTGTGTGCTTTTTCACCTGATCCTGCTAAAGCATATGTTGATGCTGTTAAGAGAGGCATGCAACCAGTTAATAACTGTGTAAAAATGCTCTCAAATGGTGCTGGTAATGGTATGGCTGTTACAAACGGTGTCGAAGCTAACACACAACAGGACTCTTATGGTGGTGCTTCAGTTTGTATTTATTGCAGATGCCATGTTGAACATCCTGCTATTGATGGATTATGCCGCTACAAAGGTAAGTTCGTGCAAATACCAACTGGCACACAAGATCCAATTCGGTTCTGTATTGAAAATGAAGTTTGTGTTGTCTGTGGTTGTTGGCTTAACAATGGTTGCATGTGCGATCGTACTTCTATGCAGAGTTTTACTGTTGATCAAAGTTATTTAAACGAGTGCGGGGTTCTAGTGCAGCTCGACTAG
Protein
MSSKQFKILVNEDYQVNVPSLPIRDVLQEIKYCYRNGFEGYVFVPEYCRDLVDCDRKDHYVIGVLGNGVSDLKPVLLTEPSVMLQGFIVRANCNGVLEDFDLKIARTGRGAIYVDQYMCGADGKPVIEGDFKDYFGDEDIIEFEGEEYHCAWTTVRDEKPLNQQTLFTIQEIQYNLDIPHKLPNCATRHVAPPVKKNSKIVLSEDYKKLYDIFGSPFMGNGDCLSKCFDTLHFIAATLRCPCGSESSGVGDWTGFKTACCGLSGKVKGVTLGDIKPGDAVVTSMSAGKGVKFFANCVLQYAGDVEGVSIWKVIKTFTVDETVCTPGFEGELNDFIKPESKSLVACSVKRAFITGDIDDAVHDCIITGKLDLSTNLFGNVGLLFKKTPWFVQKCGALFVDAWKVVEELCGSLTLTYKQIYEVVASLCTSAFTIVNYKPTFVVPDNRVKDLVDKCVKVLVKAFDVFTQIITIAGIEAKCFVLGAKYLLFNNALVKLVSVKILGKKQKGLECAFFATSLVGATVNVTPKRTETATISLNKVDDVVAPGEGYIVIVGDMAFYKSGEYYFMMSSPNFVLTNNVFKAVKVPSYDIVYDVDNDTKSKMIAKLGSSFEYDGDIDAAIVKVNELLIEFRQQSLCFRAFKDDKSIFVEAYFKKYKMPACLAKHIGLWNIIKKDSCKRGFLNLFNHLNELEDIKETNIQAIKNILCPDPLLDLDYGAIWYNCMPGCSDPSVLGSVQLLIGNGVKVVCDGCKGFANQLSKGYNKLCNAARNDIEIGGIPFSTFKTPTNTFIEMTDAIYSVIEQGKALSFRDADVPVVDNGTISTADWSEPILLEPAEYVKPKNNGNVIVIAGYTFYKDEDEHFYPYGFGKIVQRMYNKMGGGDKTVSFSEEVDVQEIAPVTRVKLEFEFDNEIVTGVLERAIGTRYKFTGTTWEEFEESISEELDAIFDTLANQGVELEGYFIYDTCGGFDIKNPDGIMISQYDINITADEKSEVSASSEEEEVESVEEDPENEIVEASEGAEGTSSQEEVETVEVADITSTEEDVDIVEVSAKDDPWAAAVDVQEAEQFNPSLPPFKTTNLNGKIILKQGDNNCWINACCYQLQAFDFFNNEAWEKFKKGDVMDFVNLCYAATTLARGHSGDAEYLLELMLNDYSTAKIVLAAKCGCGEKEIVLERAVFKLTPLKESFNYGVCGDCMQVNTCRFLSVEGSGVFVHDILSKQTPEAMFVVKPVMHAVYTGTTQNGHYMVDDIEHGYCVDGMGIKPLKKRCYTSTLFINANVMTRAEKPKQEFKVEKVEQQPIVEENKSSIEKEEIQSPKNDDLILPFYKAGKLSFYQGALDVLINFLEPDVIVNAANGDLKHMGGVARAIDVFTGGKLTERSKDYLKKNKSIAPGNAVFFENVIEHLSVLNAVGPRNGDSRVEAKLCNVYKAIAKCEGKILTPLISVGIFNVRLETSLQCLLKTVNDRGLNVFVYTDQERQTIENFFSCSIPVNVTEDNVNHERVSVSFDKTYGEQLKGTVVIKDKDVTNQLPSAFDVGQKVIKAIDIDWQAHYGFRDAAAFSASSHDAYKFEVVTHSNFIVHKQTDNNCWINAICLALQRLKPQWKFPGVRGLWNEFLERKTQGFVHMLYHISGVKKGEPGDAELMLHKLGDLMDNDCEIIVTHTTACDKCAKVEKFVGPVVAAPLAIHGTDETCVHGVSVNVKVTQIKGTVAITSLIGPIIGEVLEATGYICYSGSNRNGHYTYYDNRNGLVVDAEKAYHFNRDLLQVTTAIASNFVVKKPQAEERPKNCAFNKVAASPKIVQEQKLLAIESGANYALTEFGRYADMFFMAGDKILRLLLEVFKYLLVLFMCLRSTKMPKVKVKPPLAFKDFGAKVRTLNYMRQLNKPSVWRYAKLVLLLIAIYNFFYLFVSIPVVHKLTCNGAVQAYKNSSFIKSAVCGNSILCKACLASYDELADFQHLQVTWDFKSDPLWNRLVQLSYFAFLAVFGNNYVRCFLMYFVSQYLNLWLSYFGYVEYSWFLHVVNFESISAEFVIVVIVVKAVLALKHIVFACSNPSCKTCSRTARQTRIPIQVVVNGSMKTVYVHANGTGKFCKKHNFYCKNCDSYGFENTFICDEIVRDLSNSVKQTVYATDRSHQEVTKVECSDGFYRFYVGDEFTSYDYDVKHKKYSSQEVLKSMLLLDDFIVYSPSGSALANVRNACVYFSQLIGKPIKIVNSDLLEDLSVDFKGALFNAKKNVIKNSFNVDVSECKNLDECYRACNLNVSFSTFEMAVNNAHRFGILITDRSFNNFWPSKVKPGSSGVSAMDIGKCMTSDAKIVNAKVLTQRGKSVVWLSQDFAALSSTAQKVLVKTFVEEGVNFSLTFNAVGSDDDLPYERFTESVSPKSGSGFFDVITQLKQIVILVFVFIFICGLCSVYSVATQSYIESAEGYDYMVIKNGIVQPFDDTISCVHNTYKGFGDWFKAKYGFIPTFGKSCPIVVGTVFDLENMRPIPDVPAYVSIVGRSLVFAINAAFGVTNMCYDHTGNAVSKDSYFDTCVFNTACTTLTGLGGTIVYCAKQGLVEGAKLYSDLMPDYYYEHASGNMVKLPAIIRGLGLRFVKTQATTYCRVGECIDSKAGFCFGGDNWFVYDNEFGNGYICGNSVLGFFKNVFKLFNSNMSVVATSGAMLVNIIIACLAIAMCYGVLKFKKIFGDCTFLIVMIIVTLVVNNVSYFVTQNTFFMIIYAIVYYFITRKLAYPGILDAGFIIAYINMAPWYVITAYILVFLYDSLPSLFKLKVSTNLFEGDKFVGNFESAAMGTFVIDMRSYETIVNSTSIARIKSYANSFNKYKYYTGSMGEADYRMACYAHLGKALMDYSVNRTDMLYTPPTVSVNSTLQSGLRKMAQPSGLVEPCIVRVSYGNNVLNGLWLGDEVICPRHVIASDTTRVINYENEMSSVRLHNFSVSKNNVFLGVVSARYKGVNLVLKVNQVNPNTPEHKFKSIKAGESFNILACYEGCPGSVYGVNMRSQGTIKGSFIAGTCGSVGYVLENGILYFVYMHHLELGNGSHVGSNFEGEMYGGYEDQPSMQLEGTNVMSSDNVVAFLYAALINGERWFVTNTSMSLESYNTWAKTNSFTELSSTDAFSMLAAKTGQSVEKLLDSIVRLNKGFGGRTILSYGSLCDEFTPTEVIRQMYGVNLQAGKVKSFFYPIMTAMTILFAFWLEFFMYTPFTWINPTFVSIVLAVTTLISTVFVSGIKHKMLFFMSFVLPSVILVTAHNLFWDFSYYESLQSIVENTNTMFLPVDMQGVMLTVFCFIVFVTYSVRFFTCKQSWFSLAVTTILVIFNMVKIFGTSDEPWTENQIAFCFVNMLTMIVSLTTKDWMVVIASYRIAYYIVVCVMPSAFVSDFGFMKCISIVYMACGYLFCCYYGILYWVNRFTCMTCGVYQFTVSAAELKYMTANNLSAPKNAYDAMILSAKLIGVGGKRNIKISTVQSKLTEMKCTNVVLLGLLSKMHVESNSKEWNYCVGLHNEINLCDDPEIVLEKLLALIAFFLSKHNTCDLSELIESYFENTTILQSVASAYAALPSWIALEKARADLEEAKKNDVSPQILKQLTKAFNIAKSDFEREASVQKKLDKMAEQAAASMYKEARAVDRKSKIVSAMHSLLFGMLKKLDMSSVNTIIDQARNGVLPLSIIPAASATRLVVITPSLEVFSKIRQENNVHYAGAIWTIVEVKDANGSHVHLKEVTAANELNLTWPLSITCERTTKLQNNEIMPGKLKERAVRASATLDGEAFGSGKALMASESGKSFMYAFIASDNNLKYVKWESNNDIIPIELEAPLRFYVDGANGPEVKYLYFVKNLNTLRRGAVLGYIGATVRLQAGKPTEHPSNSSLLTLCAFSPDPAKAYVDAVKRGMQPVNNCVKMLSNGAGNGMAVTNGVEANTQQDSYGGASVCIYCRCHVEHPAIDGLCRYKGKFVQIPTGTQDPIRFCIENEVCVVCGCWLNNGCMCDRTSMQSFTVDQSYLNECGVLVQLD
Summary
Function
The papain-like proteinase 1 (PLP1) and papain-like proteinase 2 (PLP2) are responsible for the cleavages located at the N-terminus of the replicase polyprotein. In addition, PLP2 possesses a deubiquitinating/deISGylating activity and processes both 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains from cellular substrates. PLP2 also antagonizes innate immune induction of type I interferon by blocking the nuclear translocation of host IRF-3 (By similarity).
Nsp7-nsp8 hexadecamer may possibly confer processivity to the polymerase, maybe by binding to dsRNA or by producing primers utilized by the latter.
Nsp9 is a ssRNA-binding protein.
Nsp7-nsp8 hexadecamer may possibly confer processivity to the polymerase, maybe by binding to dsRNA or by producing primers utilized by the latter.
Nsp9 is a ssRNA-binding protein.
Catalytic Activity
Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).
Subunit
3CL-PRO exists as monomer and homodimer. Eight copies of nsp7 and eight copies of nsp8 assemble to form a heterohexadecamer. Nsp9 is a dimer. Nsp10 forms a dodecamer (By similarity).
Miscellaneous
Produced by conventional translation.
Similarity
Belongs to the coronaviruses polyprotein 1ab family.
Keywords
3D-structure
Activation of host autophagy by virus
Host cytoplasm
Host membrane
Host-virus interaction
Hydrolase
Inhibition of host innate immune response by virus
Inhibition of host IRF3 by virus
Inhibition of host RLR pathway by virus
Membrane
Metal-binding
Modulation of host ubiquitin pathway by viral deubiquitinase
Modulation of host ubiquitin pathway by virus
Protease
Reference proteome
Repeat
Ribosomal frameshifting
RNA-binding
Thiol protease
Transmembrane
Transmembrane helix
Ubl conjugation pathway
Viral immunoevasion
Zinc
Zinc-finger
Feature
chain Replicase polyprotein 1a
Uniprot
EMBL
Proteomes
Pfam
Interpro
IPR036499
NSP9_sf
IPR018995 RNA_synth_NSP10_coronavirus
IPR013016 Peptidase_C30/C16
IPR014827 Viral_protease
IPR002589 Macro_dom
IPR038634 A-CoV_nsp1_sf
IPR038123 NSP4_C_sf
IPR037230 NSP8_sf
IPR014829 NSP8
IPR009003 Peptidase_S1_PA
IPR014822 NSP9
IPR036333 NSP10_sf
IPR014828 NSP7
IPR037204 NSP7_sf
IPR008740 Peptidase_C30
IPR032039 A-CoV_nsp1
IPR032505 Corona_NSP4_C
IPR018995 RNA_synth_NSP10_coronavirus
IPR013016 Peptidase_C30/C16
IPR014827 Viral_protease
IPR002589 Macro_dom
IPR038634 A-CoV_nsp1_sf
IPR038123 NSP4_C_sf
IPR037230 NSP8_sf
IPR014829 NSP8
IPR009003 Peptidase_S1_PA
IPR014822 NSP9
IPR036333 NSP10_sf
IPR014828 NSP7
IPR037204 NSP7_sf
IPR008740 Peptidase_C30
IPR032039 A-CoV_nsp1
IPR032505 Corona_NSP4_C
SUPFAM
ProteinModelPortal
PDB
1P9U
E-value=0.0 Score= 617 Identity=98.01%
Cov(Q)=7.52% Cov(P)=100.00%
3D Structure
Ontologies
KEGG
GO
GO:0003968 F:RNA-directed 5'-3' RNA polymerase activity
GO:0016021 C:integral component of membrane
GO:0008242 F:omega peptidase activity
GO:0044220 C:host cell perinuclear region of cytoplasm
GO:0003723 F:RNA binding
GO:0019082 P:viral protein processing
GO:0008270 F:zinc ion binding
GO:0039520 P:induction by virus of host autophagy
GO:0004197 F:cysteine-type endopeptidase activity
GO:0019079 P:viral genome replication
GO:0033644 C:host cell membrane
GO:0039648 P:modulation by virus of host protein ubiquitination
GO:0036459 F:thiol-dependent ubiquitinyl hydrolase activity
GO:0039548 P:suppression by virus of host IRF3 activity
GO:0016021 C:integral component of membrane
GO:0008242 F:omega peptidase activity
GO:0044220 C:host cell perinuclear region of cytoplasm
GO:0003723 F:RNA binding
GO:0019082 P:viral protein processing
GO:0008270 F:zinc ion binding
GO:0039520 P:induction by virus of host autophagy
GO:0004197 F:cysteine-type endopeptidase activity
GO:0019079 P:viral genome replication
GO:0033644 C:host cell membrane
GO:0039648 P:modulation by virus of host protein ubiquitination
GO:0036459 F:thiol-dependent ubiquitinyl hydrolase activity
GO:0039548 P:suppression by virus of host IRF3 activity
Subcellular Location
From MSLVP
Capsid
From Uniprot
Host cytoplasm
Host perinuclear region
Host membrane
nsp7, nsp8, nsp9 and nsp10 are localized in cytoplasmic foci, largely perinuclear. Late in infection, they merge into confluent complexes (By similarity). With evidence from 4 publications.
Host perinuclear region
Host membrane
nsp7, nsp8, nsp9 and nsp10 are localized in cytoplasmic foci, largely perinuclear. Late in infection, they merge into confluent complexes (By similarity). With evidence from 4 publications.
Topology
Length:
4017
Number of predicted TMHs:
18
Exp number of AAs in TMHs:
443.216139999999
Exp number, first 60 AAs:
0.0002
Total prob of N-in:
0.00033
outside
1 - 1834
TMhelix
1835 - 1853
inside
1854 - 1890
TMhelix
1891 - 1913
outside
1914 - 1975
TMhelix
1976 - 1998
inside
1999 - 2004
TMhelix
2005 - 2024
outside
2025 - 2028
TMhelix
2029 - 2051
inside
2052 - 2400
TMhelix
2401 - 2423
outside
2424 - 2495
TMhelix
2496 - 2518
inside
2519 - 2658
TMhelix
2659 - 2681
outside
2682 - 2690
TMhelix
2691 - 2713
inside
2714 - 2719
TMhelix
2720 - 2742
outside
2743 - 2745
TMhelix
2746 - 2768
inside
2769 - 3185
TMhelix
3186 - 3208
outside
3209 - 3212
TMhelix
3213 - 3235
inside
3236 - 3241
TMhelix
3242 - 3264
outside
3265 - 3283
TMhelix
3284 - 3306
inside
3307 - 3312
TMhelix
3313 - 3332
outside
3333 - 3363
TMhelix
3364 - 3386
inside
3387 - 3392
TMhelix
3393 - 3415
outside
3416 - 4017
