Strain
Hedgehog_NC_039207
(Region: Germany; Strain: Betacoronavirus Erinaceus/VMC/DEU/2012 isolate ErinaceusCoV/2012-174/GER/2012, complete genome.; Date: 2012)
Gene
ORF 3b
Description
Annotated in NCBI,
ORF 3b
Location
GenBank Accession
Sequence
CDS
ATGAAGGTGCCATGTTCCATGCATGTGTTCAAAATGCTATTAGCACAGCAGCTGGCACATACACTAACACTAAATTGTCTTACCCAGTGTTTGATAATGATGGTGTTACTTACTATGATGCCACACAAGACCGCGATGCTACACCTAGTTATGAGCATAGTGAGTTTTACGAACTTGATGAATCCAGTTTCTCTGCTAAACCAGTTTTGGCAGAGTTACAATAGTGTCATCAACACAGCTGAGGATTGGGTAGGACCTCCTCAGTATTCATTTTATCCTGTGTTAAACACAGTCTCTAATATCCAGTGGTTTTGTACTGCAACCTTTTTGGGATATACAGTGCAAACCCTAGATAATACTAAAGCTCTAGCTAAACAAAAAGCTGCACAACAACTCCTTCAAAAGCTTAATGATGGATTGTAG
Protein
MKVPCSMHVFKMLLAQQLAHTLTLNCLTQCLIMMVLLTMMPHKTAMLHLVMSIVSFTNLMNPVSLLNQFWQSYNSVINTAEDWVGPPQYSFYPVLNTVSNIQWFCTATFLGYTVQTLDNTKALAKQKAAQQLLQKLNDGL
Summary
Uniprot
Pubmed
EMBL
Proteomes
Pfam
PF00035
dsrm
Interpro
IPR014720
dsRBD_dom
ProteinModelPortal
Ontologies
Subcellular Location
From MSLVP
Host nucleus. Host cytoplasm.
Topology
Length:
140
Number of predicted TMHs:
2
Exp number of AAs in TMHs:
42.3723
Exp number, first 60 AAs:
31.44018
Total prob of N-in:
0.70822
POSSIBLE N-term signal
sequence
inside
1 - 20
TMhelix
21 - 40
outside
41 - 43
TMhelix
44 - 66
inside
67 - 140
