CoVDB Coronavirus Database (v3)   
 
Demo 1 Demo 2 Clear
Found: 12 items
Strain: Human_2019-nCoV_MT375436 Gene: QJD47142.1 S surface glycoprotein
Pfam:    Corona_S2 Spike_NTD Spike_rec_bind
PDBID score Evalue Identity Align-Len Cov. (Q) Cov. (T) Q-Span T-Span Analyze in iCn3D
6VXX 1862 0.0 98.27 924 72.58% 72.13% 288 - 1211 307 - 1230 Analyze View alignments
6VYB 1861 0.0 98.16 924 72.58% 72.13% 288 - 1211 307 - 1230 Analyze View alignments
6VSB 1855 0.0 98.26 921 72.35% 71.51% 288 - 1208 288 - 1208 Analyze View alignments
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Strain: Human_2019-nCoV_MT375436 Gene: QJD47140.1 ORF1 ORF1ab polyprotein
Pfam:    Nsp1 SUD-M Macro NSP11 NAR DUF3655 nsp7 nsp8 Corona_RPol_N Corona_NSP4_C Nsp3_PL2pro NSP10 nsp9 Peptidase_C30 Viral_protease NSP16
PDBID score Evalue Identity Align-Len Cov. (Q) Cov. (T) Q-Span T-Span Analyze in iCn3D
6M71 1962 0.0 99.89 932 13.13% 98.94% 4393 - 5324 1 - 932 Analyze View alignments
7BTF 1962 0.0 99.89 932 13.13% 98.94% 4393 - 5324 1 - 932 Analyze View alignments
6NUS 1901 0.0 96.03 933 13.15% 97.70% 4391 - 5323 1 - 933 Analyze View alignments
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Strain: Human_2019-nCoV_MT375436 Gene: QJD47150.1 N nucleocapsid phosphoprotein
Pfam:    Corona_nucleoca
PDBID score Evalue Identity Align-Len Cov. (Q) Cov. (T) Q-Span T-Span Analyze in iCn3D
6YI3 286 4e-97 99.27 137 32.70% 97.86% 43 - 179 3 - 139 Analyze View alignments
6M3M 283 1e-95 100.00 134 31.98% 98.53% 41 - 174 3 - 136 Analyze View alignments
1SSK 272 4e-91 91.97 137 32.70% 86.71% 43 - 179 21 - 157 Analyze View alignments
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Strain: Human_2019-nCoV_MT375436 Gene: QJD47145.1 M membrane glycoprotein
Pfam:    Corona_M
Strain: Human_2019-nCoV_MT375436 Gene: QJD47144.1 E envelope protein
Pfam:    NS3_envE
PDBID score Evalue Identity Align-Len Cov. (Q) Cov. (T) Q-Span T-Span Analyze in iCn3D
5X29 58.2 4e-13 88.71 62 82.67% 76.54% 4 - 65 20 - 81 Analyze View alignments
2MM4 56.2 2e-12 91.38 58 77.33% 100.00% 8 - 65 1 - 58 Analyze View alignments
Strain: Human_2019-nCoV_MT375436 Gene: QJD47141.1 ORF1a polyprotein
Pfam:    Nsp1 SUD-M Macro NSP11 NAR DUF3655 nsp7 nsp8 Corona_RPol_N Corona_NSP4_C Nsp3_PL2pro NSP10 nsp9 Peptidase_C30 Viral_protease NSP16
PDBID score Evalue Identity Align-Len Cov. (Q) Cov. (T) Q-Span T-Span Analyze in iCn3D
6W9C 667 0.0 100.00 315 7.15% 99.37% 1564 - 1878 1 - 315 Analyze View alignments
5R7Z 650 0.0 100.00 306 6.95% 100.00% 3264 - 3569 1 - 306 Analyze View alignments
5R80 650 0.0 100.00 306 6.95% 100.00% 3264 - 3569 1 - 306 Analyze View alignments
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Strain: Human_2019-nCoV_MT375436 Gene: QJD47143.1 ORF3a protein
Pfam:    APA3_viroporin
Strain: Human_2019-nCoV_MT375436 Gene: QJD47146.1 ORF6 protein
Pfam:    Sars6
Strain: Human_2019-nCoV_MT375436 Gene: QJD47147.1 ORF7a protein
Pfam:    SARS_X4
PDBID score Evalue Identity Align-Len Cov. (Q) Cov. (T) Q-Span T-Span Analyze in iCn3D
1XAK 157 2e-51 88.89 81 66.94% 97.59% 15 - 95 2 - 82 Analyze View alignments
1YO4 157 2e-51 90.48 84 69.42% 96.55% 16 - 98 3 - 86 Analyze View alignments
Strain: Human_2019-nCoV_MT375436 Gene: QJD47148.1 ORF7b
Pfam:    DUF2873
Strain: Human_2019-nCoV_MT375436 Gene: QJD47149.1 ORF8 protein
Pfam:    Corona_NS8
Strain: Human_2019-nCoV_MT375436 Gene: QJD47151.1 ORF10 protein
Pfam:   
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