CoVDB Coronavirus Database (v3)   
 
Demo 1 Demo 2 Clear
Found: 12 items
Strain: Human_2019-nCoV_MT375462 Gene: QJD47454.1 S surface glycoprotein
Pfam:    Corona_S2 Spike_NTD Spike_rec_bind
PDBID score Evalue Identity Align-Len Cov. (Q) Cov. (T) Q-Span T-Span Analyze in iCn3D
6VXX 2148 0.0 88.74 1199 94.19% 93.60% 13 - 1211 32 - 1230 Analyze View alignments
6VYB 2147 0.0 88.66 1199 94.19% 93.60% 13 - 1211 32 - 1230 Analyze View alignments
6VSB 2145 0.0 88.81 1197 94.03% 92.93% 12 - 1208 12 - 1208 Analyze View alignments
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Strain: Human_2019-nCoV_MT375462 Gene: QJD47452.1 ORF1 ORF1ab polyprotein
Pfam:    Nsp1 SUD-M Macro NSP11 NAR DUF3655 nsp7 nsp8 Corona_RPol_N Corona_NSP4_C Nsp3_PL2pro NSP10 nsp9 Peptidase_C30 Viral_protease NSP16
PDBID score Evalue Identity Align-Len Cov. (Q) Cov. (T) Q-Span T-Span Analyze in iCn3D
6M71 1952 0.0 99.46 932 13.13% 98.94% 4393 - 5324 1 - 932 Analyze View alignments
7BTF 1952 0.0 99.46 932 13.13% 98.94% 4393 - 5324 1 - 932 Analyze View alignments
6NUS 1890 0.0 95.61 933 13.15% 97.70% 4391 - 5323 1 - 933 Analyze View alignments
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Strain: Human_2019-nCoV_MT375462 Gene: QJD47462.1 N nucleocapsid phosphoprotein
Pfam:    Corona_nucleoca
PDBID score Evalue Identity Align-Len Cov. (Q) Cov. (T) Q-Span T-Span Analyze in iCn3D
6M3M 282 1e-95 100.00 134 31.98% 98.53% 41 - 174 3 - 136 Analyze View alignments
6YI3 277 2e-93 99.24 132 31.50% 94.29% 43 - 174 3 - 134 Analyze View alignments
6VYO 268 5e-90 100.00 127 30.31% 99.22% 47 - 173 2 - 128 Analyze View alignments
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Strain: Human_2019-nCoV_MT375462 Gene: QJD47457.1 M membrane glycoprotein
Pfam:    Corona_M
Strain: Human_2019-nCoV_MT375462 Gene: QJD47456.1 E envelope protein
Pfam:    NS3_envE
PDBID score Evalue Identity Align-Len Cov. (Q) Cov. (T) Q-Span T-Span Analyze in iCn3D
5X29 58.2 4e-13 88.71 62 82.67% 76.54% 4 - 65 20 - 81 Analyze View alignments
2MM4 56.2 2e-12 91.38 58 77.33% 100.00% 8 - 65 1 - 58 Analyze View alignments
Strain: Human_2019-nCoV_MT375462 Gene: QJD47453.1 ORF1a polyprotein
Pfam:    Nsp1 SUD-M Macro NSP11 NAR DUF3655 nsp7 nsp8 Corona_RPol_N Corona_NSP4_C Nsp3_PL2pro NSP10 nsp9 Peptidase_C30 Viral_protease NSP16
PDBID score Evalue Identity Align-Len Cov. (Q) Cov. (T) Q-Span T-Span Analyze in iCn3D
6W9C 667 0.0 100.00 315 7.15% 99.37% 1564 - 1878 1 - 315 Analyze View alignments
5R7Z 650 0.0 100.00 306 6.95% 100.00% 3264 - 3569 1 - 306 Analyze View alignments
5R80 650 0.0 100.00 306 6.95% 100.00% 3264 - 3569 1 - 306 Analyze View alignments
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Strain: Human_2019-nCoV_MT375462 Gene: QJD47455.1 ORF3a protein
Pfam:    APA3_viroporin
Strain: Human_2019-nCoV_MT375462 Gene: QJD47458.1 ORF6 protein
Pfam:    Sars6
Strain: Human_2019-nCoV_MT375462 Gene: QJD47459.1 ORF7a protein
Pfam:    SARS_X4
PDBID score Evalue Identity Align-Len Cov. (Q) Cov. (T) Q-Span T-Span Analyze in iCn3D
1XAK 157 2e-51 88.89 81 66.94% 97.59% 15 - 95 2 - 82 Analyze View alignments
1YO4 157 2e-51 90.48 84 69.42% 96.55% 16 - 98 3 - 86 Analyze View alignments
Strain: Human_2019-nCoV_MT375462 Gene: QJD47460.1 ORF7b
Pfam:    DUF2873
Strain: Human_2019-nCoV_MT375462 Gene: QJD47461.1 ORF8 protein
Pfam:    Corona_NS8
Strain: Human_2019-nCoV_MT375462 Gene: QJD47463.1 ORF10 protein
Pfam:   
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