Strain
JAPAN_FERRET_2013_LC119077
(Region: Japan; Strain: Ferret coronavirus genomic RNA, complete genome, strain: FRCoV4370.; Date: 2013)
Gene
ORF1a polyprotein
Description
Annotated in NCBI,
ORF1a polyprotein
Location
GenBank Accession
Sequence
CDS
ATGGTGTTCAAGCATTTTAGGATCCTCGTTAATGAGGACCAGGAAATTACCTTACGTGGTTATAAAAACCGCTTAGATTGTCAGCGTGCTTTGAAACAATGCTGGCTTAGCGGTTTTAATGGCTACGTCTTTGTACCTGAATACTCTAGAGACCTGCTCACTGGTTGTCGTGAACAGTTGCACGTTTTTGGTGTATTCGGTGCTAATGATTGTGTCATCAAACCTTGCATGTTAGAAGAACAATCTGTTAACTTGCAAGGCTTTATTGTACTCTCTGACGCTAATGGTGTAGAGGAGGATTTTTATCTTAGCCTTAGCACCTATGGCGGCATGATTGTGTACGTTGATCAATACATGTGTGGAGCTGATGGTAAGCCTGTTATCTCTGGTGAGATGCATGACTACTTCGGCGATTTAGATGATATTGTCATTGATGGCATTACATATTCGCATGCATGGGACGTCGAACGCGATCTTGATGTAACCCATGACAAACAGACTTTTCTCAACATAAAGTCTATAATGTACTTACAGGACAAAGACCACAAGCTTCCTAATGGCGCAATTCGTGTACGTGCTGCGCCAGTAAAGCTAAGTTCTAAGGTTGTACTTTCTCAACCTTTTGCTGACATGTATAAGCACTTTGGTTCACCATTTATGCAAAACGGTGATAACCTCCACGGTTGTTTCACCAAACTCAATTTCATTGTTGCCAACGTTAAGTGTAAGTGTGGTGGTGAGTCAAGTGGTGTTGGTGATTGGACTGGGTTTAAGTCAGCATGTTGTGGTTTACCTGGTAAGGTTATAGGTGTGTCTCTAGGTAATGCTGCAGTTGGTGAGGCTGTTGTTACATCTAAGGGTTGTGGCAATGGTACTAAGTTTTATGCCAATGCTGTACTGAAACATGTTGGAGATGCTGAAGATGTTTCTATCTGGCGTGTTATGGCTACCTATGCAAAAGACATAGTAGCCACTAGTACTTTTGATAAGTGTAGACTAGAAATACTTGACCACACTAGTGACAGCACATTGGCTACTAGTGTGAAGAAGTGCTATCTCACTGGTAAACCAGATAAGGATGTTGTTGACGCCATAGTTGCTGGCCACATTAATGTCTCTAGCAACATTTTTGGTGTAGTTAAGGATTTGTTTTCCAACGTTCCCTGGTTTATCAAGAGGTGTGGTGATCTGTTTGCTGACGCATGGTACTCAGTGTGTGAGTTCTTGAGTAGTGGCGGTGTTTCTTACGTCACTATTAGAGACACCATTAAAATGCTTTGTAGTGCAGCATTTACCATCAGAGGATCAAAACCTATTTTTATTGTTTCTTCTGCAGCTTCAAGTCTTGTTAGAAGCTGCATTAGCATTTTAGAGTCTGTTTTTGACATGTTCACACAGACTATAGAGTTTTTTGGAGTTGTTGCCAAGTGTCTTGTGCTTGGTTGTAAATACATCTTATTTGAGAATGCACTCTTCAAGTTAGAAACTTTCAAGCTGTCAGGTAAGCGTGAATCTGGTTTGAAGAATGCTGTTTTTGCTTCTGCCATTGTTGGTAGTACGATGGAGGTTAAACCATCTAGATTTGAGAAATCTACAGCCAACTTAGTTGTTGTAGACGATGTTGTTGTGCCTGGAGAAGGTTATGTAGTTGTTATTGGAGACATGGCTTTTTATCGCAGTGGTGACCATTATTTTATGATGTCATCACCCACCAGTGTTTTGACTACTACTGTGTTCAAAGCCGAAAAAGCTAATGTCTACAAAGTTGCTTACAATGTCCCAGATACTTATAAAGAAAAACTTATTTGTGACATTGGTACATCTTATAGTTTTGAAGGTTCTATAGATGCTGCTACCGTCAAGCTTAACACTCAGTTGCAATCTTATTGCGATAATACTTTGTGTTTTAGAGCTTTTTCATTGAAAGAAAGCATCATTGTCGAGCCTTTCAAGCATAAGTATAAGATGCCTAAATGTCTTAAAAATCATACAGGCCTCTGGGAAATTATTCTGAGTGGTTCTAAAGATTTGGGATTCTTTGATAAGTATAAAGCATTGGAATCTCTGGATGACATCTATGACACAACTGATTATGTCAACTTAGTCTGCCCAAAAATCTTGCACAAGTTTGATAATGGTATAATGTGGTACCGCTGTATGAAAGGTGTTACAGGTCCTATTGCAACACGTGCAGTTTGCAGCTTTGTTGGAGGTTGTGTTAAAGTTTGTTTAGAAGGTTTTGATTCTGTTGCTGCTAAAGTTGAAAGCTGCTACCAAAAACTCTGTGGTGTTAAGACCTTTGATCTGAATGTTGCCGGCATTGAACTTGCCGGTTTTAAAACACCAAACGGAAAAACCTTTCTAGATTTTGGCAATGATGTCATCGAACTTTTTGATGACGAACCTGTGCGTTGTTTTACAGGTGCTACTGTGCCTGTAGCCGTTTCAGATTTTGAAGATGTTGTTCGGAATGATGTCTTTTTAGAAGAATGTGAATACCTTCCTCCAAAAGCTGAAGGTGTAGTTGTTAACTTGGATGGTTACACGTTCTACACTACTGATAATGAGAATTTCTACCCTTTTGGCGATTGTAAAGTCGTTCCAAAATTGTATAACAAAGTTGGTGGTGGTAAGACTGTAACTTTTAGTGACGATATAGAGGTCAGAGAAGTTGAACCCGTCTGCAAAGTTAAAGTCACCTTTGAGTTTGATAATGAAACTATAGCAGCAGTTTTAAATAAGGTTATTGGTAATACTGTTAGCTTCGAAGGTGCTAACTGGGAGACTCTCGATGAGTTGTTGACCACACAGGTTGATGCCGTGTTTATGCAGCTATCTCAAGCAGGTTTGAATCCACCAGATTATTATATATATGATGGTTGTGGTGGTTTTGATGTGACCTGCCCTGAAGGCATCATGGTTTCACAGTATGATCTGGTTGCTGACGGTGTCAATGCCTGTAATTCAGACTGTATTGCTGACCACAGTCTGTCAGATGAACAGGTAGCTGCTATTGTCAATGATTGTAACTTGGAACATGTGGAGGAAGTCTCTGACTATTGTCCATCTGATGATGATGCTGATGGGGATGGGTGTACTGAAAATGCTTCACCATTTGCTTTTGATAACAGTACGATTAACGGTAAAGTTGTACTTAAACAATCACAAAATAACTGCTGGGTTAATGCAGCCGGTTATCAATTACAGTGTCTTAATGTGCTTGATAGTGAAGAGTTCAAGCAGTATTGTGACGGTAATGTTGAGAGTTTTGTACAACTTATGTATGCCATGACTAGCAGAGAAATTGGTGATTTAGGTGAAGCTGAACATGTGTTAGAGCTTTGTCTGGCTGGTTTGGAAACAGCAACAGTGACCCTGACCGCACAATGTAATTGTGGCACATTTGAAGATGTCATTGTAAGCTGTGTTTTTAGGATGTGTTGTACAAGTGATACGTTTGACTATGGTATGTGTGGCACTTGTAACAATGTTAAGAAGACTACTATTGTGAAAGTTGAAGGTACTGGTGTCTTTTTACATGAACCTAAAACTTACAAGCCTCTTGTCAAGCCAGTTTGCAAAGCAATTTTTAAAGGTAACACTGATGGTGGCCACTATATGGTTCATGACGTCCAAGCCAATGTTCTAGTTGACGGTTTTGGTCTGCACCCGGTGAAGAACATACCCTTTACTTCTGTTTGTTTTGTTGATGCCGCATATGTTAAAGATGTTAAAGCTAAAAGTGTTGCCAAACACGACCCGTGGGCTGCTGCCGTAGACATTCAAGAAACACAGAGTGCACTAGCAGACGTACGCAGTGATTGCGAGTCTGCTTGTGTAGCTAAATGTGCTTCTTCCGCTAGTGTCGAAGTCACGAATGTAACCAACGAGTCAGCCTCTCCCACAGTTATGGCAGTGCAACAAGTTTCCACTGTAAAGCCATTTTTTGAAACGGGTTTGCTTAAGTTTTATAGAGGTGATGTTAAAACGTTAGTTGATGCCATCAAGCCTAAAGTCTTAGTAAACGCTGCCAATTCGCACCTTCAACACAAGGGTGGTGTCGCAAAAGCAATTGATGTTTTTACGGGCGGTGCACTTAGTTTGGAATCCACCAATTACCTTAAACGTTATAAACCTATACCGTCTGGTAATGTGGTAGTTTTTAATGATGTGCTGGAAGGTCTTAACATTGCTAATGCAGTGGGACCACGTGTGTCTGAGGAGCGGTACGAACAGAAACTTGCTTCTGTTTACCGTAAATTGGTTAAGGTTGAAGGTCCTATGTTAACACCTCTTATTAGTTGTGGCATTTTTGGTGTGCCACTTGAGCAATCATTGAAAGCTTTGATTAAGGCCTTTAAATCAACAAGTGTTTCTGTGTTCGTATACACAGAAGAGGAGCAGAGTAAAGTTTTACAGTACTTTGAGACACCTGTCACAGTTCTTTTAGAAGACGGCCCTAGTGTTCAAAAAGTAGTTTTAGAACCAGTAGTAACTCTTGACTCACAACTGGCTTCTAAGGTTGTCAATAAGAACGTGTTATGTGATGGTGTTTACCCTGATGTGAACTTTGATCATGAAGTCTTGACCAAAGTTGATGATGTAGACTGGTCGTCATATTATGGGTTTGCTAATGCTGACACTTTCAGTGCCTTAAAACATGATGACTTCGTGTTTGAAAGTACTATAGTTGATGGTTTTGTCGTTTTTAAACAAACTGACAACAACTGTTGGGTCAATGCTACGTGTATGCTACTACAAAACTTAAAGCCCACATGGCGTTTTAAGGGTATGGAAGACTTATGGTCTAAATTTGTTAGTGGCAACACAGCACCATTTGTACACCTTTTATATTTCATTATTAATGCAAACCGAGGTGACCCTAATGACGTTGAGTTTGTTTTGCATAAACTTGAACCATTGATGTGTGAAAGTGGCTCCGTAACTTTAGACAATTTTAAAGGTTGTGATGTTTGTTACAAACCCAGTACTGTCACAGGTTCTGTTGTAGCTGCTCCTCTACAAGCTAAAGGGGACAACACAGTGTGCACCCATGGTAAGAGTGTTACAACACGTGTAACTAATGTCCAAGGTTCTGTTGTGTTGACATCTACTTGTGGTGTTGTTAGCAATAGTATAAAGGGTGATGGTTACGTGTGTTTTAATGGTTCTGCCAGTAGTGGACATTATACATACAGTTCTAGAAATGGTACTGTTTATGACGCTGATAAAACATACACATTTAAGGTGGACGATTTAAGTGTAGCATCTGTTCTCATGTTAACTGGTTACAAATTGCCAGTAGTCCACGCTCCCTGTGTACCTAAAGGTGCTTCGAATGCAAGCGAGCCAGATACCATGCAAAAGCTAGACGCGTATGCAAACATGTTCTTTGCTTTTGGTGACATGTCACTTAAAGCCTGTGTTACAATTTTTAAGTACCTTTTGTGTTTTTATTGTTTCTTTTTAGAACGCTGCACAAAGCCTAAGAGGCTTAAAGTGAAGGTTAAACCACCTTTTGCTTTAAAGCCATTGGACGTAAAACTGCGAGCTCTTAATTCTGTAAAATTGCTTACAAACACTAAATTTTGGTTCTATCTAAAGTTTTTATTAGGTTTATTGTTGTTGTATAACTTGTTGTATGTTATGGTAAGTGTACCATTTATACATAGGTTTGCTTGTGCTAGTTACACTAGAGCGTATGCAAACTCCAGCTTTGTGAAAGCGGATGTTTGCACACGCTCAGTTTTGTGCAAGGCGTGTTTGGCGTCTTATGAAGAGTTGTCTGATTTTGATAATCTCAAAGTTGTTTGGGATTACAAATCCGACCCTCTTTGGAGCAAAATGTTGCAACTAGTTTATTTTGGTACTCTTATGGTGTTTGGTAACAATGTGTTAAGGGTCGCTATGCTCTATTTTGTTGCACAGTATTTAAACACATGGTTTTCTTACTATGGTTTAGTCAATTATAGTTGGTTGTTGCACATTGTGAATTTTGAGACTGTAGCTGCTGAAATTGTTGTGTTAATGGTTGTTGTAAAAGGATTCTTCTTCTTAAAGCATTACTGGTATGGTTGTGACAATGCTAGTTGTTTGTCTTGTTCTAAAACTGCTAAACAAAAACGCATACCAGTAAGCGTGATTGTTAATGGAAGTATGAAGACTGTTTATGTGCATACTAATGGTGGGTCAAAATTTTGCTCTAAACATAATTTCTATTGTAAAAATTGTGAATCTAATGGTGTTGGCAACACATTTATCTGCCATGAGGTTGTTAGAGAATTGTCTAACATTGTAAAGCACACTGTACATGCTACAGATGTGTCTTTTAAAGAGGTAGATAAAGTTGAGTGTTCGGAAGGGTTTTATAGACTTTACACTGGTGATGAGTATACACGTTATAATTACGACATCACAGACAAGAAGTACAGTTGTAAAGAAGCTCTTAAGTCTCTTCAGTTGATTGATGATTTTGTTGTATATGACCCTATTGGCACAACACCTGCAAATCTGCACAATGCTTGTGTGTATTGGTCACAACTATTAGGTAAACCTATTAAGCTTGTGAACAGAGATCTCATACAATCGTTAACTGTGGATTTTAATGGTGTTTTGTTTGATGCGCATAGACGTGTTGTTAGTAACTCATTTAATGTAGATGTTGCAGCCTGTAAGACGCTGCGTGATTGTTATGAAGCTTGCAAAACCGATGTTCCTTACAATGTCTTTGAAGACGTTGTTAACAATGCACATAAGTATGATGTACTTATGACCGACATTAGTTATAATAACATCTGGTTGACATATGCCAAGCCCGAAGAGAACTTGTCAAGTTTTGACGTTGCAAACTGCATTAAATCTGGTGCAAAGGTTGTTAGTCATAATGTTTTGATAAAAGAAAATGTACCCATAGTATGGTATGCTAAAGATTTTATTAGTCTTAGCAATGAGGCCAGACAGCTTTTAATTAAAACGTCTAAGGCTAAGGGTGTGACTATCATGTTGTCTTTTAACAACAATCCAATGAGCCACACTTTGCCAACTGTTGCTATTGGTCGTAAAAGTGGTTCTGGTTTCTTTGATGTATACCGTGAGTTTAAACAAGTTACAATGCTCATTGTTGCAGTCTTGTTAGCATGGGGTTTATGTTGCATCTACAATGGTTACACCCCAGCACGTGTAAGCTCTGCACCAGGTTATGACTTTATGGTTATTAGGAGTGGTAAAATTCAGAGTTTTGACGATTCTATAACTTGTGTGCACAATGTTTATAATGAGTTTCCGTCTTGGTATCTTGGTAAGTATGGTAAAAGTTTGTCTTATGCTAAAACATGCCCTATTGTTGTTGGTACTGTGTTTGATATTGTTGATAGTATGAAACCTGTCCCTGATGTACCTGCGTATGTCACTCTTGTTGGCAGGTCGTTGGTGTTTGCTATCAATGCAGTTTTTGGTAATACTGACTTATGTTATGACCATCAAGGTGTAGCTAAGTCTAGGGACTCTGTTTTTGACAATTGTGTTTTTAATGCAGCTTGCACCCAGCTTGTTGGTATGGGTGGTACTGCAGTGTATTGCTTCAAGGATGGAGTTATGCCCGGGGCTCATAAGACCTATGCCGAATTACTACCTGATGCCCATTATGTGCTACGGGACGGTAATACGTTGAAATTACCTACAATTATTAGAGGTTTTGGTTTACGTATTGTACAAACGCTCGCAACTACGTATTGCAGAGTTGGTGAGTGTACACAATCCAAACAAGGATTTTGCGTGGGTTTAGATAATTGGTTTGTTTATGACAAGGCTTTTGGTGAAGGTTATATTTGTGGTGACAGTGTTTTTGGTTTTGTAACTAATGTGTTTAAGTTATTTAATCAAAACTTGTCGGTTGTTGCAACGTCTGGGTATATGTTAACTAATATGCTTATAGCTCTGTTTGCCATAGCAGTCTGTTATGCATTCTTGAAGTTTAAGAGAGTTTTTGGTGATTGTACAATGTTTGTTTCTATGATTATTGTTACACTCTTTATTAACAACCTATCATACTTTTTCACACATAATTTGGTGTTAGTGGTTGTTTATGCTGTAGCATATTATTTCTTGTCTAGACGTTTGCCTTACCCAGGGGTCATGGATGCAGGTTTTATGCTTGCATATGTTGGCATGGCACCATGGTGGTTGTTTGTAGGTTATGTGCTACTGTTTTGCTATGATTCAATACCATCATTTTTTAAATTGAAGGTTTCTACAAACTTATTCGAAGGTGACAAGTTCGTAGGTAATTTTGAATCTGCAGCTGCTGGCACTTTTGTTATAGATATGCATTCTTATCAAGTCCTTGTCAATTCTATTCCCATGGAGAGACTGAGAAGTTATGCTTCTACCTTTAACAAGTATAAATATTATACTGGTAGTATGGGTGAAGCTGATTATCGTATGGCTTGCTATGCCCATTTAGCTAAGGCTTTAATGGATTATGGCAATAACCGTAATGATATGCTTTATACACCACCCACAGTAAGTGTGAATTCTACTCTTCAGTCTGGTCTTAGAAAAATTGCACAACCTTCTGGTGTTGTTGAACCATGTATTGTTCGTGTAGCTTATGGCAGTACAGTGCTTAATGGTCTTTGGTTAGGCGATGAAGTTATTTGTCCTAGACATGTCATTGCAAGTGACACTTCAAAACCTATTAATTATGACACCGAACTCTTGGGAGTCAGGTTGCATAATTTTTCAATTTCTAAGGGCAATGACTTTTTGGGTGTTATAGGGTGTTCTTATCGTGGTGTTAACCTTATAATTAAGGTTAGCCAGAACAACACGCTAACACCCAAACATAAGTTTAGAACTGTTAAAGCAGGTGAGAGTTTTAACATCTTAGCTTGTTACGATGGTAAGCCTAATGGTGTTTACGGTGTTAATATGCGTACGCAAGGCACTATTAAAGGTACTTTTATTAATGGTACTTGTGGTTCACCTGGTTATGTTTTAGACGGTGACATTGTAAACTTTGTTTACATGCATCATCTAGAACTCGGTAATGGCTCACATGTTGGTTCTAACCTAGAAGGTGTTATGTATGGTGGTTATGAAGATCAACCTAGCATGCAGCTGGAAGGTGTGAATGTTATGTCTACTGATAATGTTGTTGCATTTCTTTATGCTGCTCTTATTAATGGCGAACGCTGGTTTGTGGGCAACGCCACAGTTGCATTAGAGACATATAATAATTGGGCTATTGCTAATGGTTTCACAGAATTGAGCTCTGTGGACTCTTTTAGTATGCTATCTGCCAAGACGGGTGTTAGTGTTGAAAAACTGTTGGAGGCTGTAATGCGCTTGTCAACAAGTCTGGGAGGTAAAACCATACTTGGATATGGCTCATTGACTGATGAATTCACAACAACAGAAGTTGTGCGCCAAATGTTTGGTGTTAATTTACAGAGTAATTCAGTCAAATCTTGGTTCTACCCAATTGCTATCATAGTTGTTTGTATGTTTGCTTTTTGGACTGAATTCTTTTTGTATACACCTTTCAGTTGGTTTGGTCCAGCCAGTATAGGATGTCTCTTACTTCTGACTGTTGTAGTATCCACATCACTTACAATTTTTGTGAAGCACAAAATGTTGTATTTCATGTCATTCCTTTTACCTAGTGTTATTCTTATGACAGTTAGTAACTTGGTATGGGATAGTTTGTACATAGCAGCAGTTCAGGCTAAGTTGGTGGAGGTTAACATGTCGTTGGTAGCTGTGGACATGCAGAGTGTGTCACTTATTGTGTTGTGTTTGCTTGTAGCAATTGTTCATTGCTACAGATTTTGCACACAAAGACAATCCATACCCGTGTTTGTTGTTACACTCTGCTTTGTTTTCTACAATTTTGCATCCCAATGGTACTATTATCTTAGAGGCTTAGATATGGGTGTTAATCTACAGTTTGGTTATGTTAATCTTGGTATGATGCTAGTGTGTTTGATGACTAAGGATTGGATTGTTGTAGCTGTTGCATACAGGGTGGCTTATTACATTGTTCTATACATCCTAGCACCTGATGTCGTTAATGATTTTGGTTTATTGAAATGTCTGTGTGTTGTTTACATGTTGCTAGGGTATTGTAGTTGTTGTTATTATGGTGTTCTATATTGGGTAAACCGCTTTACACACATGACGTGTGGTGTTTACCAATTTGCTGTATCAGCAGCTGAGTTGAAATACATGACAGCCAACAATCTGACTGCACCACGTAATGCTTATGAAGCAATGGTTTTAAGCTCAAAATTGGTTGGCATTGGCGGCAACAGAAACATTAAGATTGCCTCTGTCCAATCTAAATTGACAGATATGAAATGTACTAATGTTGTTTTATTAGGTTTGTTGTCTAAAATGCATATTGAGGCTAACTCTAAGGAGTGGAATTATTGTGTGAATTTGCACAATGAAATCAATCTTAGTGATGATTCTGACGTTGTGCTTAACAAGTTACTTGCGCTGTTGGCCTTCTTTTTGTCTAAGCATAATAGTTGTGACTTGTCAGAACTCATTGAGTCTTACTTTGACAACCCATCTATATTGCAAAGTGTGGCATCTGCGTATGCTAATCTCCCTTCCTGGGTGGCGTACGAACAGGCACGTGATGCATACATGGAAGGTAAGAAGAATGACCTTGCAGCACCAGTTATTAAACAACTTCAAAAAGCTATGAATATAGCTAAGGCTGAGTTTGATCGTGAAGCTAGTGTTCAAAAGAAACTTGACCGAATGGCCGAGCAAGCTGCATCTAACATGTTCAAGGAAGCGCGTGCTGTAGACCGTAAATCTAAAATTATCGGTGCTATGCACAGTTTGCTATTTGGAATGCTTAAAAAGTTAGACATGTCATCTGTTAATACTATAATGGAACAAGCACGTAATGGTTGCTTGCCTCTTAGTATTATACCTGCAGCATCTGCAACACGATTGGTTGTTGTAACTCCTAACATAGAAGTGTTTTCTAAAATAAGACTTGACAACAACGTACACTATGCCGGTGCAGTTTGGTCAATTGTAGAAGTAAGAGATGCTAACAGTGCTGTTGTACACCTTAAAGAAGTTACACAACATAATGAACAAAATATGTGCTGGCCTCTTACTGTAACCTGTGAGCGTGTTGCAAAATTACAGAACAATGAAATCATGCCTGGTAAAATGAAGGAGCGTGCTGTTAAAGCGTCAGCGACTATGGATGGTGACGCTAATGTTAATGGTAAGGCTCTATTTGCTGCAGAAGGTGGCAAGCATTTTATGTATGCTTTGGTTTCTGGTGATGGTAATTTGAAATACGTTAAATGGGAGGGTAATAACGATGTTATTACTATTGAATTAGAGCAACCTTTAAGGTTTTATGTAGAAGGTCCTAACGGTCCTGAGGTTAAACATTTGTATTTCGTTAAGAATTTGAACACATTGAGACGTGGTGCAGTCCTTGGCTACATAGGTGCCACTGTGCGCTTGCAAGCTGGTAAACAGACGGAACACCCTTCTAACAGTAGTTTACTCACTCTTTGTGCTTTTGCACCTGAACCTGCTAAAGCATACGTTGAATTGGTTAAGAAAGGTATGCAGCCTGTAAACAACTGTGTGAAAATGTTGTCTAATGGTTCTGGCAATGGTATGGCCGTTACCAATGGTGTAGAGGCTACACCCAACCAGGATTCGTATGGTGGTGCATCTGTATGTGTCTATTGTAGATCTCATACTGCACACCCTTCCTTAGACGGTTTTTGCAGGTTTAAAGGCAAGTTTGTACAGGTGCCCACAGGTACAGTGGATCCTATAAGATTTTGTATAGAAAATGAAATCTGTGCTGTCTGCGCTTGTTGGCTTAATAATGGGTGTGTTTGTGATAGAACCTCTATGCAGGCAGCTGTTGTAGACCAGAGTTATTTAAACGAGTACGGGGTTCTAGTGGAGCTCGACTAG
Protein
MVFKHFRILVNEDQEITLRGYKNRLDCQRALKQCWLSGFNGYVFVPEYSRDLLTGCREQLHVFGVFGANDCVIKPCMLEEQSVNLQGFIVLSDANGVEEDFYLSLSTYGGMIVYVDQYMCGADGKPVISGEMHDYFGDLDDIVIDGITYSHAWDVERDLDVTHDKQTFLNIKSIMYLQDKDHKLPNGAIRVRAAPVKLSSKVVLSQPFADMYKHFGSPFMQNGDNLHGCFTKLNFIVANVKCKCGGESSGVGDWTGFKSACCGLPGKVIGVSLGNAAVGEAVVTSKGCGNGTKFYANAVLKHVGDAEDVSIWRVMATYAKDIVATSTFDKCRLEILDHTSDSTLATSVKKCYLTGKPDKDVVDAIVAGHINVSSNIFGVVKDLFSNVPWFIKRCGDLFADAWYSVCEFLSSGGVSYVTIRDTIKMLCSAAFTIRGSKPIFIVSSAASSLVRSCISILESVFDMFTQTIEFFGVVAKCLVLGCKYILFENALFKLETFKLSGKRESGLKNAVFASAIVGSTMEVKPSRFEKSTANLVVVDDVVVPGEGYVVVIGDMAFYRSGDHYFMMSSPTSVLTTTVFKAEKANVYKVAYNVPDTYKEKLICDIGTSYSFEGSIDAATVKLNTQLQSYCDNTLCFRAFSLKESIIVEPFKHKYKMPKCLKNHTGLWEIILSGSKDLGFFDKYKALESLDDIYDTTDYVNLVCPKILHKFDNGIMWYRCMKGVTGPIATRAVCSFVGGCVKVCLEGFDSVAAKVESCYQKLCGVKTFDLNVAGIELAGFKTPNGKTFLDFGNDVIELFDDEPVRCFTGATVPVAVSDFEDVVRNDVFLEECEYLPPKAEGVVVNLDGYTFYTTDNENFYPFGDCKVVPKLYNKVGGGKTVTFSDDIEVREVEPVCKVKVTFEFDNETIAAVLNKVIGNTVSFEGANWETLDELLTTQVDAVFMQLSQAGLNPPDYYIYDGCGGFDVTCPEGIMVSQYDLVADGVNACNSDCIADHSLSDEQVAAIVNDCNLEHVEEVSDYCPSDDDADGDGCTENASPFAFDNSTINGKVVLKQSQNNCWVNAAGYQLQCLNVLDSEEFKQYCDGNVESFVQLMYAMTSREIGDLGEAEHVLELCLAGLETATVTLTAQCNCGTFEDVIVSCVFRMCCTSDTFDYGMCGTCNNVKKTTIVKVEGTGVFLHEPKTYKPLVKPVCKAIFKGNTDGGHYMVHDVQANVLVDGFGLHPVKNIPFTSVCFVDAAYVKDVKAKSVAKHDPWAAAVDIQETQSALADVRSDCESACVAKCASSASVEVTNVTNESASPTVMAVQQVSTVKPFFETGLLKFYRGDVKTLVDAIKPKVLVNAANSHLQHKGGVAKAIDVFTGGALSLESTNYLKRYKPIPSGNVVVFNDVLEGLNIANAVGPRVSEERYEQKLASVYRKLVKVEGPMLTPLISCGIFGVPLEQSLKALIKAFKSTSVSVFVYTEEEQSKVLQYFETPVTVLLEDGPSVQKVVLEPVVTLDSQLASKVVNKNVLCDGVYPDVNFDHEVLTKVDDVDWSSYYGFANADTFSALKHDDFVFESTIVDGFVVFKQTDNNCWVNATCMLLQNLKPTWRFKGMEDLWSKFVSGNTAPFVHLLYFIINANRGDPNDVEFVLHKLEPLMCESGSVTLDNFKGCDVCYKPSTVTGSVVAAPLQAKGDNTVCTHGKSVTTRVTNVQGSVVLTSTCGVVSNSIKGDGYVCFNGSASSGHYTYSSRNGTVYDADKTYTFKVDDLSVASVLMLTGYKLPVVHAPCVPKGASNASEPDTMQKLDAYANMFFAFGDMSLKACVTIFKYLLCFYCFFLERCTKPKRLKVKVKPPFALKPLDVKLRALNSVKLLTNTKFWFYLKFLLGLLLLYNLLYVMVSVPFIHRFACASYTRAYANSSFVKADVCTRSVLCKACLASYEELSDFDNLKVVWDYKSDPLWSKMLQLVYFGTLMVFGNNVLRVAMLYFVAQYLNTWFSYYGLVNYSWLLHIVNFETVAAEIVVLMVVVKGFFFLKHYWYGCDNASCLSCSKTAKQKRIPVSVIVNGSMKTVYVHTNGGSKFCSKHNFYCKNCESNGVGNTFICHEVVRELSNIVKHTVHATDVSFKEVDKVECSEGFYRLYTGDEYTRYNYDITDKKYSCKEALKSLQLIDDFVVYDPIGTTPANLHNACVYWSQLLGKPIKLVNRDLIQSLTVDFNGVLFDAHRRVVSNSFNVDVAACKTLRDCYEACKTDVPYNVFEDVVNNAHKYDVLMTDISYNNIWLTYAKPEENLSSFDVANCIKSGAKVVSHNVLIKENVPIVWYAKDFISLSNEARQLLIKTSKAKGVTIMLSFNNNPMSHTLPTVAIGRKSGSGFFDVYREFKQVTMLIVAVLLAWGLCCIYNGYTPARVSSAPGYDFMVIRSGKIQSFDDSITCVHNVYNEFPSWYLGKYGKSLSYAKTCPIVVGTVFDIVDSMKPVPDVPAYVTLVGRSLVFAINAVFGNTDLCYDHQGVAKSRDSVFDNCVFNAACTQLVGMGGTAVYCFKDGVMPGAHKTYAELLPDAHYVLRDGNTLKLPTIIRGFGLRIVQTLATTYCRVGECTQSKQGFCVGLDNWFVYDKAFGEGYICGDSVFGFVTNVFKLFNQNLSVVATSGYMLTNMLIALFAIAVCYAFLKFKRVFGDCTMFVSMIIVTLFINNLSYFFTHNLVLVVVYAVAYYFLSRRLPYPGVMDAGFMLAYVGMAPWWLFVGYVLLFCYDSIPSFFKLKVSTNLFEGDKFVGNFESAAAGTFVIDMHSYQVLVNSIPMERLRSYASTFNKYKYYTGSMGEADYRMACYAHLAKALMDYGNNRNDMLYTPPTVSVNSTLQSGLRKIAQPSGVVEPCIVRVAYGSTVLNGLWLGDEVICPRHVIASDTSKPINYDTELLGVRLHNFSISKGNDFLGVIGCSYRGVNLIIKVSQNNTLTPKHKFRTVKAGESFNILACYDGKPNGVYGVNMRTQGTIKGTFINGTCGSPGYVLDGDIVNFVYMHHLELGNGSHVGSNLEGVMYGGYEDQPSMQLEGVNVMSTDNVVAFLYAALINGERWFVGNATVALETYNNWAIANGFTELSSVDSFSMLSAKTGVSVEKLLEAVMRLSTSLGGKTILGYGSLTDEFTTTEVVRQMFGVNLQSNSVKSWFYPIAIIVVCMFAFWTEFFLYTPFSWFGPASIGCLLLLTVVVSTSLTIFVKHKMLYFMSFLLPSVILMTVSNLVWDSLYIAAVQAKLVEVNMSLVAVDMQSVSLIVLCLLVAIVHCYRFCTQRQSIPVFVVTLCFVFYNFASQWYYYLRGLDMGVNLQFGYVNLGMMLVCLMTKDWIVVAVAYRVAYYIVLYILAPDVVNDFGLLKCLCVVYMLLGYCSCCYYGVLYWVNRFTHMTCGVYQFAVSAAELKYMTANNLTAPRNAYEAMVLSSKLVGIGGNRNIKIASVQSKLTDMKCTNVVLLGLLSKMHIEANSKEWNYCVNLHNEINLSDDSDVVLNKLLALLAFFLSKHNSCDLSELIESYFDNPSILQSVASAYANLPSWVAYEQARDAYMEGKKNDLAAPVIKQLQKAMNIAKAEFDREASVQKKLDRMAEQAASNMFKEARAVDRKSKIIGAMHSLLFGMLKKLDMSSVNTIMEQARNGCLPLSIIPAASATRLVVVTPNIEVFSKIRLDNNVHYAGAVWSIVEVRDANSAVVHLKEVTQHNEQNMCWPLTVTCERVAKLQNNEIMPGKMKERAVKASATMDGDANVNGKALFAAEGGKHFMYALVSGDGNLKYVKWEGNNDVITIELEQPLRFYVEGPNGPEVKHLYFVKNLNTLRRGAVLGYIGATVRLQAGKQTEHPSNSSLLTLCAFAPEPAKAYVELVKKGMQPVNNCVKMLSNGSGNGMAVTNGVEATPNQDSYGGASVCVYCRSHTAHPSLDGFCRFKGKFVQVPTGTVDPIRFCIENEICAVCACWLNNGCVCDRTSMQAAVVDQSYLNEYGVLVELD
Summary
Similarity
Belongs to the coronaviruses polyprotein 1ab family.
Uniprot
EMBL
Proteomes
Pfam
Interpro
IPR002589
Macro_dom
IPR036333 NSP10_sf
IPR008740 Peptidase_C30
IPR038634 A-CoV_nsp1_sf
IPR037204 NSP7_sf
IPR009003 Peptidase_S1_PA
IPR013016 Peptidase_C30/C16
IPR038123 NSP4_C_sf
IPR014828 NSP7
IPR018995 RNA_synth_NSP10_coronavirus
IPR014822 NSP9
IPR032505 Corona_NSP4_C
IPR014829 NSP8
IPR014827 Viral_protease
IPR036499 NSP9_sf
IPR032039 A-CoV_nsp1
IPR037230 NSP8_sf
IPR036333 NSP10_sf
IPR008740 Peptidase_C30
IPR038634 A-CoV_nsp1_sf
IPR037204 NSP7_sf
IPR009003 Peptidase_S1_PA
IPR013016 Peptidase_C30/C16
IPR038123 NSP4_C_sf
IPR014828 NSP7
IPR018995 RNA_synth_NSP10_coronavirus
IPR014822 NSP9
IPR032505 Corona_NSP4_C
IPR014829 NSP8
IPR014827 Viral_protease
IPR036499 NSP9_sf
IPR032039 A-CoV_nsp1
IPR037230 NSP8_sf
SUPFAM
ProteinModelPortal
PDB
4F49
E-value=2.5229e-136,
Score=1253
Ontologies
GO
GO:0019082 P:viral protein processing
GO:0016021 C:integral component of membrane
GO:0004197 F:cysteine-type endopeptidase activity
GO:0008242 F:omega peptidase activity
GO:0033644 C:host cell membrane
GO:0003723 F:RNA binding
GO:0008270 F:zinc ion binding
GO:0039520 P:induction by virus of host autophagy
GO:0019079 P:viral genome replication
GO:0044220 C:host cell perinuclear region of cytoplasm
GO:0003968 F:RNA-directed 5'-3' RNA polymerase activity
GO:0016021 C:integral component of membrane
GO:0004197 F:cysteine-type endopeptidase activity
GO:0008242 F:omega peptidase activity
GO:0033644 C:host cell membrane
GO:0003723 F:RNA binding
GO:0008270 F:zinc ion binding
GO:0039520 P:induction by virus of host autophagy
GO:0019079 P:viral genome replication
GO:0044220 C:host cell perinuclear region of cytoplasm
GO:0003968 F:RNA-directed 5'-3' RNA polymerase activity
Subcellular Location
From MSLVP
Capsid
From Uniprot
Host cytoplasm
Host perinuclear region
Host membrane
Host perinuclear region
Host membrane
Topology
Length:
3988
Number of predicted TMHs:
14
Exp number of AAs in TMHs:
364.423169999999
Exp number, first 60 AAs:
0.00159
Total prob of N-in:
0.00070
outside
1 - 1800
TMhelix
1801 - 1823
inside
1824 - 1862
TMhelix
1863 - 1885
outside
1886 - 1948
TMhelix
1949 - 1971
inside
1972 - 1990
TMhelix
1991 - 2013
outside
2014 - 2633
TMhelix
2634 - 2656
inside
2657 - 2676
TMhelix
2677 - 2699
outside
2700 - 2713
TMhelix
2714 - 2736
inside
2737 - 3155
TMhelix
3156 - 3178
outside
3179 - 3182
TMhelix
3183 - 3205
inside
3206 - 3211
TMhelix
3212 - 3234
outside
3235 - 3248
TMhelix
3249 - 3271
inside
3272 - 3282
TMhelix
3283 - 3305
outside
3306 - 3332
TMhelix
3333 - 3352
inside
3353 - 3364
TMhelix
3365 - 3387
outside
3388 - 3988
Population Genetic Test Statistics
Pi
0.2816296
Theta
0.39576
Tajima's D
-1.0463676
CLR
5.813
Interpretation
No evidence of Selection
Genomic alignment in the CDS region
Multiple alignment of Orthologues
Gene Tree
Orthologous in Strains
| Strain | Availability | Status | Gene |
|---|---|---|---|
| CHINA_HS_2019_MN908947 | |||
| CHINA_AVIAN_2008_NC_016995 | |||
| CHINA_AVIAN_2007_NC_016991 | |||
| CHINA_MURINE_2015_NC_035191 | |||
| CANADA_AVIAN_2007_NC_010800 | |||
| USA_PIG_2000_NC_038861 | |||
| CHINA_AVIAN_2007_NC_011549 | |||
| ITALY_PIG_2009_NC_028806 | |||
| GERMANY_PIG_2012_LT545990 | |||
| CHINA_AVIAN_2007_NC_016992 | |||
| CHINA_BAT_2005_NC_009657 | |||
| CANADA_HS_2003_NC_004718 | |||
| CHINA_BAT_2014_NC_030886 | |||
| CHINA_BAT_2005_NC_018871 | |||
| USA_MURINE_2009_NC_012936 | |||
| CHINA_RABBIT_2006_NC_017083 | |||
| UK_PIG_2000_NC_003436 | |||
| ROMANIA_PIG_2015_LT898435 | |||
| ROMANIA_PIG_2015_LT898436 | |||
| GERMANY_PIG_2015_LT898444 | |||
| GERMANY_PIG_2015_LT898414 | |||
| GERMANY_PIG_2015_LT898439 | |||
| GERMANY_PIG_2015_LT898413 | |||
| GERMANY_PIG_2015_LT898412 | |||
| GERMANY_PIG_2015_LT898411 | |||
| GERMANY_PIG_2015_LT898416 | |||
| GERMANY_PIG_2015_LT898443 | |||
| GERMANY_PIG_2015_LT898420 | |||
| GERMANY_PIG_2015_LT898408 | |||
| GERMANY_PIG_2015_LT898423 | |||
| GERMANY_PIG_2015_LT898432 | |||
| GERMANY_PIG_2015_LT898409 | |||
| GERMANY_PIG_2015_LT898425 | |||
| GERMANY_PIG_2015_LT898446 | |||
| GERMANY_PIG_2014_LT898438 | |||
| GERMANY_PIG_2014_LT898440 | |||
| GERMANY_PIG_2014_LT900501 | |||
| GERMANY_PIG_2014_LT898427 | |||
| GERMANY_PIG_2014_LT898415 | |||
| GERMANY_PIG_2014_LT898421 | |||
| GERMANY_PIG_2014_LT898431 | |||
| GERMANY_PIG_2014_LT898410 | |||
| GERMANY_PIG_2014_LT900498 | |||
| GERMANY_PIG_2014_LT898430 | |||
| GERMANY_PIG_1978_LT897799 | |||
| GERMANY_PIG_2014_LT898447 | |||
| GERMANY_PIG_2014_LT898426 | |||
| GERMANY_PIG_2014_LT898417 | |||
| GERMANY_PIG_2014_LT900500 | |||
| GERMANY_PIG_2014_LT898445 | |||
| AUSTRIA_PIG_2015_LT898418 | |||
| AUSTRIA_PIG_2015_LT898441 | |||
| AUSTRIA_PIG_2015_LT898433 | |||
| AUSTRIA_PIG_2015_LT900502 | |||
| GERMANY_PIG_2015_LT900499 | |||
| BELGIUM_PIG_1980_LT906620 | |||
| BELGIUM_PIG_1977_LT905450 | |||
| SWITZERLAND_PIG_2003_LT905451 | |||
| BELGIUM_PIG_1978_LT906581 | |||
| UK_PIG_1987_LT906582 | |||
| CHINA_PIG_2009_NC_016990 | |||
| CHINA_PIG_2010_NC_039208 | |||
| KENYA_BAT_2010_KY073745 | |||
| KENYA_BAT_2010_NC_032107 | |||
| CHINA_AVIAN_2007_NC_016994 | |||
| EUROPE_MURINE_2004_AY700211 | |||
| CHINA_AVIAN_2007_NC_011550 | |||
| USA_MURINE_1997_NC_001846 | |||
| USA_MURINE_1998_NC_023760 | |||
| MID_EAST_HS_2012_NC_019843 | |||
| CHINA_AVIAN_2007_NC_016993 | |||
| CHINA_MURINE_2013_NC_032730 | |||
| USA_HS_2004_AY585228 | |||
| NETHERLAND_HS_2004_NC_005831 | |||
| CHINA_HS_2004_NC_006577 | |||
| EUROPE_HS_2000_NC_002645 | |||
| NETHERLAND_FERRET_2010_NC_030292 |
Protein |
YP_009256196.1 |
|
| JAPAN_FERRET_2013_LC119077 |
Protein |
BAV31347.1 |
|
| USA_FELINE_2005_NC_002306 | |||
| CHINA_MURINE_2011_NC_034972 | |||
| CHINA_AVIAN_2007_NC_016996 | |||
| ARABIA_CAMEL_2015_NC_028752 | |||
| CHINA_AVIAN_2007_NC_011547 | |||
| CHINA_BAT_2012_NC_028824 | |||
| CHINA_BAT_2013_NC_028814 | |||
| CHINA_BAT_2013_NC_028833 | |||
| CHINA_BAT_2011_NC_028811 | |||
| USA_BOVIN_2001_NC_003045 | |||
| CHINA_MURINE_2012_NC_026011 | |||
| GERMANY_ERINACEINAE_2012_NC_022643 | |||
| GERMANY_ERINACEINAE_2012_NC_039207 | |||
| UK_HS_2012_NC_038294 | |||
| AMERICA_WHALE_2007_NC_010646 | |||
| CHINA_BAT_2013_NC_025217 | |||
| UGANDA_BAT_2013_NC_034440 | |||
| CHINA_BAT_2006_NC_009021 | |||
| CHINA_BAT_2008_NC_010438 | |||
| CHINA_BAT_2006_NC_009020 | |||
| CHINA_BAT_2006_NC_009019 | |||
| CHINA_BAT_2006_NC_009988 | |||
| USA_BAT_2006_NC_022103 | |||
| BULGARIA_BAT_2008_NC_014470 | |||
| CHINA_BAT_2008_NC_010437 | |||
| USA_AVIAN_2004_NC_001451 |
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zhuzl@cqu.edu.cn,
mg@cau.edu.cn
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