CoVDB Coronavirus Database Go to the lastest version >>
Strain
BELGIUM_PIG_1977_LT905450 (Region: Belgium;  Strain: Porcine epidemic diarrhea virus isolate CV777 genome assembly, complete genome: monopartite.;  Date: 1977)
Gene
membrane protein
Description
Annotated in NCBI,  membrane protein
GenBank Accession
Full name
Membrane protein      
Alternative Name
E1 glycoprotein
Matrix glycoprotein
Membrane glycoprotein
 

Sequence

CDS
ATGTCTAACGGTTCTATTCCCGTTGATGAGGTGATTGAACACCTTAGAAACTGGAATTTCACATGGAATATCATACTGACGATACTACTTGTAGTGCTTCAGTATGGCCATTACAAGTACTCTGTGTTCTTGTATGGTGTCAAGATGGCTATTCTATGGATACTTTGGCCTCTTGTGTTGGCACTGTCACTTTTTGACGCATGGGCTAGCTTCCAGGTCAACTGGGTCTTTTTCGCTTTCAGCATCCTTATGGCTTGCATCACTCTTATGCTGTGGATAATGTATTTTGTCAATAGCATTCGGTTGTGGCGCAGGACACATTCTTGGTGGTCTTTCAATCCTGAAACTGACGCGCTTCTCACTACTTCTGTGATGGGCCGACAGGTCTGCATTCCAGTGCTTGGAGCACCAACTGGTGTAACGCTAACACTCCTTAGTGGTACATTGCTTGTAGAGGGCTATAAGGTTGCTACTGGCGTACAGGTAAGTCAATTACCTAATTTCGTCACAGTCGCCAAGGCCACTACAACAATTGTCTACGGACGTGTTGGTCGTTCAGTCAATGCTTCATCTGGCACTGGTTGGGCTTTCTATGTCCGGTCAAAACACGGCGACTATTCAGCTGTGAGTAATCCGAGTGCGGTTCTCACAGATAGTGAGAAAGTGCTTCATTTAGTCTAA
Protein
MSNGSIPVDEVIEHLRNWNFTWNIILTILLVVLQYGHYKYSVFLYGVKMAILWILWPLVLALSLFDAWASFQVNWVFFAFSILMACITLMLWIMYFVNSIRLWRRTHSWWSFNPETDALLTTSVMGRQVCIPVLGAPTGVTLTLLSGTLLVEGYKVATGVQVSQLPNFVTVAKATTTIVYGRVGRSVNASSGTGWAFYVRSKHGDYSAVSNPSAVLTDSEKVLHLV

Summary

Function
Component of the viral envelope that plays a central role in virus morphogenesis and assembly via its interactions with other viral proteins.
Subunit
Homomultimer. Interacts with envelope E protein in the budding compartment of the host cell, which is located between endoplasmic reticulum and the Golgi complex. Forms a complex with HE and S proteins. Interacts with nucleocapsid N protein. This interaction probably participates in RNA packaging into the virus.
Similarity
Belongs to the alphacoronaviruses M protein family.
Keywords
Glycoprotein   Host Golgi apparatus   Host membrane   Membrane   Transmembrane   Transmembrane helix   Viral envelope protein   Viral matrix protein   Virion  
Feature
chain  Membrane protein
EMBL
Z24733    AF353511    Z14976    EU033967    KJ526109    KJ857378    + More
KY198261    KY198262    KY198282    KY198284    KY198287    AB618615    AB618616    LT905450    LT905451    LT906582    LT906620    ABU50840.1    AJD07383.1    AJD09501.1    ARM53662.1    ARM53663.1    ARM53683.1    ARM53685.1    ARM53688.1    BAK33001.1    SNU46339.1    SNW64187.1    KX791060    KY198294    AQX36345.1    ARM53695.1    EU033962    EU033963    EU033966    FJ687455    ABU50830.1    ABU50832.1    ABU50838.1    ACV81755.1    KJ646593    KJ646597    KJ646599    KJ646601    KJ646602    KY198266    KY198275    AIC82400.1    AIC82404.1    AIC82406.1    AIC82408.1    AIC82409.1    ARM53667.1    ARM53676.1    JX560761    KC189944    KC836508    KJ646595    KJ646607    KM048290    KP728470    KY619829    AB618617    AB618618    AFX98016.1    AGN29323.1    AGV05245.1    AIC82402.1    AIC82414.1    AIT56249.1    AKP99784.1    ATJ03684.1    BAK33003.1    MF462814    ASY04646.1    JN089731    KF761675    KT021227    D89752    AER39412.1    AHG97488.1    ALM09361.1    BAA25380.1    MK558089    QEQ55817.1    KM048294    KR078316    MH061338    MK140811    MK140812    MK140814    AIT56253.1    ALG76015.1    AZL47207.1    QCC26584.1    QCC26591.1    QCC26605.1    LT897799    SNC44848.1    AY653205    EU033964    KJ646598    KJ646603    KJ646604    MH061341    AAT75299.1    ABU50834.1    AIC82405.1    AIC82410.1    AIC82411.1    AZL47225.1    MG781192    AUZ98439.1    JX002688    JX002689    KF840553    KF840554    KJ526110    KX812523    KY198273    KY198278    KY198279    KY007139    KY619836    MH004417    MH004418    MF281416    MG546687    MH061342    MH243316    MK644601    AFN66541.1    AFN66542.1    AIE16018.1    AIE16022.1    AJD07384.1    AQW35010.1    ARM53674.1    ARM53679.1    ARM53680.1    ATG31097.1    ATJ03691.1    AVU05378.1    AVU05385.1    AWA45277.1    AYP73631.1    AZL47231.1    QBA57548.1    QFG01691.1    JX002685    JX002693    KC109141    KC210146    KP162057    KT323979    AFN66538.1    AFN66546.1    AGD98688.1    AGG55743.1    AJW67221.1    ALS35471.1    KR610991    KR610992    AKH45335.1    JN547228    AEQ55007.1    KJ857395    AJD09518.1    KU893873    APX42140.1    AY974335    AAX84831.1    FJ687457    ACV81757.1    FJ687449    FJ687450    FJ687451    FJ687452    FJ687456    FJ687465    FJ687471    FJ687472    JQ023161    KJ857383    KJ857384    MF737355    ACV81749.1    ACV81750.1    ACV81751.1    ACV81752.1    ACV81756.1    ACV81765.1    ACV81771.1    ACV81772.1    AFE85965.1    AJD09506.1    AJD09507.1    ASW30997.1    JX869045    AFZ45985.1    JN083782    JN083783    JN083785    JN083787    JN089739    JN089740    JN089741    JN089745    JN089746    JQ654496    JQ305133    JQ723736    JQ710438    JX002686    JX002691    JX188454    JX489155    JX524137    JX501325    JX647847    KF384500    KJ960178    KJ960179    KJ960180    KM609204    KM089829    KR610993    KR610994    KP765609    KX010481    KX010484    KX010488    KY698022    KY928065    MF346935    MG373542    MG373544    MF581000    MH708895    MG983755    MH061339    MH581489    MH748550    MH726384    MH726385    MH726386    MH726387    MH726388    MH726389    MH726390    MH726391    MH726392    MH726393    MH726402    MH726403    MH726404    MK690502    MK644603    MK644605    MK656470    MK656471    MK656476    MK656477    MK656478    MK656479    MK656480    MK656481    MK656482    MK656483    AER35134.1    AER35135.1    AER35137.1    AER35139.1    AER39420.1    AER39421.1    AER39422.1    AER39426.1    AER39427.1    AFD64565.1    AFF60690.1    AFJ54357.1    AFK73393.1    AFN66539.1    AFN66544.1    AFQ37601.1    AFV09317.1    AFV46347.1    AFV59247.1    AFW99001.1    AGR51645.1    AJP67405.1    AKE53208.1    AKH45341.1    AKO90058.1    AND65698.1    AND65701.1    AND65705.1    ARD24434.1    ART84253.1    ASO67380.1    AUD08949.1    AUD08951.1    AWU22295.1    AYL64495.1    AYW03312.1    AZL47213.1    AZP53860.1    AZS18881.1    QCQ19933.1    QCQ19939.1    QCQ19945.1    QCQ19951.1    QCQ19957.1    QCQ19963.1    QCQ19969.1    QCQ19975.1    QCQ19981.1    QCQ19987.1    QCQ20041.1    QCQ20047.1    QCQ20053.1    QER78626.1    QFG01703.1    QFG01715.1    QFG71733.1    QFG71734.1    QFG71739.1    QFG71740.1    QFG71741.1    QFG71742.1    QFG71743.1    QFG71744.1    QFG71745.1    QFG71746.1    KY929405    ART85702.1    LM645057    CDW77208.1    FJ158546    ACM50726.1    KT799996    AMP46774.1    KJ857382    AJD09505.1    EU031893    EU542416    EU542417    EU542419    FJ196191    FJ196192    FJ196193    FJ196194    FJ196195    FJ687462    FJ687463    FJ687464    FJ687466    FJ687467    FJ687468    FJ687469    FJ687470    FJ687473    JF690779    JN083788    JN089722    JN089723    JN089725    JN089729    JN089738    JN089744    JN173327    JN173329    JN173330    JN173331    JN173332    JN173333    JN173334    JN173335    JN584168    JN400907    JQ282909    JQ390544    JQ305129    JQ305130    JQ305131    JQ305132    JQ664730    JQ678035    JX088695    JX163295    JX435308    JX435309    JX435310    JX435315    JX435316    JX501328    KC148526    KC176073    KC210145    KC210147    KC140102    KF272920    KF267450    KC836505    KC836511    KC836512    KC836514    KC836515    KC836516    KC836517    KF468752    KF468753    KF468754    KF650370    KF650371    KF650372    KF650373    KF650374    KF650375    KF804028    KF452322    KF452323    KF760557    KF779470    KJ001722    KJ001723    KJ001725    KJ001728    KJ001729    KJ001730    KJ001731    KJ001736    KJ001739    KJ001740    KJ399978    KJ020932    KJ408801    KJ588062    KJ588063    KJ588064    KJ623926    KJ778616    KJ584361    KJ646600    KJ646608    KJ642643    KJ645635    KJ645636    KJ645637    KJ645638    KJ645639    KJ645640    KJ645641    KJ645642    KJ645643    KJ645645    KJ645646    KJ645647    KJ645648    KJ645649    KJ645650    KJ645651    KJ645652    KJ645653    KJ645654    KJ645655    KJ645656    KJ645657    KJ645658    KJ645659    KJ645660    KJ645661    KJ645662    KJ645663    KJ645664    KJ645665    KJ645666    KJ645667    KJ645668    KJ645669    KJ645670    KJ645671    KJ645672    KJ645673    KJ645675    KJ645676    KJ645677    KJ645678    KJ645679    KJ645680    KJ645681    KJ645682    KJ645683    KJ645684    KJ645685    KJ645686    KJ645687    KJ645688    KJ645689    KJ645690    KJ645691    KJ645692    KJ645693    KJ645694    KJ645695    KJ645696    KJ645697    KJ645698    KJ645699    KJ645700    KJ645701    KJ645702    KJ645703    KJ645704    KJ645705    KJ645706    KJ645707    KJ645708    KJ662670    KF840537    KF840540    KF840544    KF840545    KF840546    KF840547    KF840548    KF840549    KF840550    KF840551    KF840552    KF840555    KF840556    KF840557    KJ777677    KM077139    KM052365    KJ184549    KM392224    KM392226    KM392227    KM392228    KM392229    KM392230    KM392231    KM392232    KM189367    KM403155    KM048283    KM048287    KM048288    KM048291    KM048295    KM048296    KJ526096    KJ526105    KJ526106    KJ526107    KJ526108    KJ526111    KJ857388    KJ857389    KJ857391    KJ857393    KJ857394    KJ857401    KM609203    KM609205    KM609206    KM609207    KM609209    KM609210    KM609211    KM609212    KM609213    KP202365    KR003452    KR011756    KR265759    KR265760    KR265761    KR265762    KR265763    KR265764    KR265765    KR265766    KR265767    KR265768    KR265769    KR265770    KR265771    KR265772    KR265773    KR265774    KR265775    KR265776    KR265777    KR265778    KR265779    KR265780    KR265781    KR265782    KR265783    KR265784    KR265785    KR265786    KR265787    KR265788    KR265789    KR265790    KR265791    KR265792    KR265793    KR265794    KR265795    KR265796    KR265797    KR265798    KR265799    KR265800    KR265801    KR265802    KR265803    KR265804    KR265805    KR265806    KR265807    KR265808    KR265809    KR265810    KR265811    KR265812    KR265813    KR265814    KR265815    KR265816    KR265817    KR265818    KR265819    KR265821    KR265822    KR265823    KR265825    KR265826    KR265827    KR265829    KR265830    KR265831    KR265832    KR265833    KR265834    KR265840    KR265841    KR265842    KR265843    KR265844    KR265846    KP688354    KM975735    KM975736    KM975737    KM975738    KM975739    KM975740    KM975741    KR078299    KR078300    KR873431    KR873432    KR873433    KR873434    KR873435    KR873436    KR873437    KT021228    KT021229    KT021230    KT021231    KP641661    KP641662    KP641663    KT199103    KT941120    KT323980    KU297956    KU569509    KT591944    KT860508    KU380331    KU975389    KR153325    KR153326    KU252649    KX010479    KX010480    KX010482    KX010483    KX010485    KX010486    KX010490    KX010491    KX010492    KX064280    KU982966    KU982967    KU982968    KU982969    KU982970    KU982971    KU982972    KU982973    KU982974    KU982975    KU982976    KU982977    KU982978    KU982979    KU982980    KX253991    KU847996    KX066126    KY019623    KY019624    KX981440    KY070587    KU893861    KU893869    KX580953    KX550281    KX812524    KY111278    KX016034    KY198263    KY198264    KY198267    KY198268    KY198269    KY198270    KY198271    KY198272    KY198274    KY198276    KY198277    KY198280    KY198281    KY198283    KY198285    KY198286    KY198288    KY198289    KY198290    KY198291    KY198292    KY198295    KY198296    KY198297    KY198298    KY198299    KY198300    KX683006    KY499261    KY499262    KY793536    KY825240    KY825241    KY825242    KY825243    KY963963    KX289955    KX852340    KX852347    KY619830    KY619831    KY619832    KY619833    KY619834    KY619835    KY619838    KY619839    MF782686    MF782687    MF375374    MF373643    MG334554    MG334555    MG837011    MG837012    MH004419    MH004420    MH006957    MH006958    MH006959    MH006960    MH006962    MH006963    MH006965    MH013462    MH013463    MH013464    MH013465    MH013466    MH052683    MH052687    MH052688    MG837058    MH107321    MG546690    MH301100    MH061336    MH061340    MH117940    LC022792    LC093864    LC063810    LC063811    LC063812    LC063813    LC063814    LC063815    LC063816    LC063817    LC063818    LC063819    LC063822    LC063823    LC063824    LC063825    LC063826    LC063827    LC063828    LC063829    LC063830    LC063831    LC063832    LC063833    LC063834    LC063835    LC063836    LC063837    LC063838    LC063839    LC063840    LC063841    LC063842    LC063843    LC063844    LC063845    LC063846    LC063847    LM645058    MH593900    MH243318    MK032689    MK032692    MK606368    MK140813    MH726362    MH726363    MH726365    MH726367    MH726369    MH726371    MH726372    MH726373    MH726374    MH726376    MH726383    MK482396    MK482397    MN037494    MK409657    MK409658    MK628691    MK644602    MK656465    MK656466    MK656467    MK656473    LT898408    LT898415    LT898413    LT898421    LT898414    LT898411    LT898416    LT898418    LT898423    LT898409    LT898420    LT898412    LT898410    LT898432    LT898425    LT898431    LT898427    LT898430    LT898433    LT898426    LT898436    LT898438    LT898440    LT898439    LT898435    LT898441    LT898443    LT898446    LT898445    LT898444    LT898417    LT898447    LT900498    LT900499    LT900500    LT900502    LT900501    ABS72126.1    ACA81417.1    ACN23187.1    ACN23188.1    ACN23189.1    ACN23190.1    ACN23191.1    ACV81762.1    ACV81763.1    ACV81764.1    ACV81766.1    ACV81767.1    ACV81768.1    ACV81769.1    ACV81770.1    ACV81773.1    AEE38482.1    AER35140.1    AER39403.1    AER39404.1    AER39406.1    AER39410.1    AER39419.1    AER39425.1    AET71226.1    AET71228.1    AET71229.1    AET71230.1    AET71231.1    AET71232.1    AET71233.1    AET71234.1    AEW24874.1    AEW24885.1    AFB77237.1    AFD98088.1    AFF60686.1    AFF60687.1    AFF60688.1    AFF60689.1    AFJ80124.1    AFK08618.1    AFP36392.1    AFQ37429.1    AFU35757.1    AFU35758.1    AFU35759.1    AFU35764.1    AFU35765.1    AFV59250.1    AFZ85188.1    AFZ85189.1    AGG55740.1    AGG55753.1    AGK89917.1    AGO58927.1    AGS12452.1    AGV05242.1    AGV05248.1    AGV05249.1    AGV05251.1    AGV05252.1    AGV05253.1    AGV05254.1    AGY31025.1    AGY31031.1    AGY31037.1    AHA38121.1    AHA38128.1    AHA38135.1    AHA38142.1    AHA38149.1    AHA38156.1    AHA38163.1    AHC03505.1    AHC03511.1    AHF20048.1    AHG99157.1    AHK25060.1    AHK25061.1    AHK25063.1    AHK25066.1    AHK25067.1    AHK25068.1    AHK25069.1    AHK25074.1    AHK25077.1    AHK25078.1    AHL38187.1    AHM88220.1    AHN60055.1    AHX58673.1    AHX58679.1    AHX58685.1    AHY04232.1    AHZ94890.1    AIA61017.1    AIC82407.1    AIC82415.1    AIC83852.1    AID56670.1    AID56676.1    AID56682.1    AID56688.1    AID56694.1    AID56700.1    AID56706.1    AID56712.1    AID56718.1    AID56730.1    AID56736.1    AID56742.1    AID56748.1    AID56754.1    AID56760.1    AID56766.1    AID56772.1    AID56778.1    AID56784.1    AID56790.1    AID56796.1    AID56802.1    AID56808.1    AID56814.1    AID56820.1    AID56826.1    AID56832.1    AID56838.1    AID56844.1    AID56850.1    AID56856.1    AID56862.1    AID56868.1    AID56874.1    AID56880.1    AID56886.1    AID56892.1    AID56898.1    AID56910.1    AID56916.1    AID56922.1    AID56928.1    AID56934.1    AID56940.1    AID56946.1    AID56952.1    AID56958.1    AID56964.1    AID56970.1    AID56976.1    AID56982.1    AID56988.1    AID56994.1    AID57000.1    AID57006.1    AID57012.1    AID57018.1    AID57024.1    AID57030.1    AID57036.1    AID57042.1    AID57048.1    AID57054.1    AID57060.1    AID57066.1    AID57072.1    AID57078.1    AID57084.1    AID57090.1    AID57096.1    AID57102.1    AID57108.1    AID66724.1    AIE15938.1    AIE15953.1    AIE15973.1    AIE15978.1    AIE15983.1    AIE15989.1    AIE15993.1    AIE15998.1    AIE16003.1    AIE16008.1    AIE16013.1    AIE16028.1    AIE16033.1    AIE16038.1    AIJ01338.1    AIK28711.1    AIK69678.1    AIM47751.1    AIN52091.1    AIN52103.1    AIN52109.1    AIN52115.1    AIN52121.1    AIN52127.1    AIN52133.1    AIN52139.1    AIP84470.1    AIR95868.1    AIT56242.1    AIT56246.1    AIT56247.1    AIT56250.1    AIT56254.1    AIT56255.1    AJD07369.1    AJD07379.1    AJD07380.1    AJD07381.1    AJD07382.1    AJD07385.1    AJD09511.1    AJD09512.1    AJD09514.1    AJD09516.1    AJD09517.1    AJD09524.1    AJP67399.1    AJP67411.1    AJP67417.1    AJP67423.1    AJP67435.1    AJP67441.1    AJP67447.1    AJP67453.1    AJP67459.1    AKA88562.1    AKC34875.1    AKE47381.1    AKJ21704.1    AKJ21710.1    AKJ21716.1    AKJ21722.1    AKJ21728.1    AKJ21734.1    AKJ21740.1    AKJ21746.1    AKJ21752.1    AKJ21758.1    AKJ21764.1    AKJ21770.1    AKJ21776.1    AKJ21782.1    AKJ21788.1    AKJ21794.1    AKJ21800.1    AKJ21806.1    AKJ21812.1    AKJ21818.1    AKJ21824.1    AKJ21830.1    AKJ21836.1    AKJ21842.1    AKJ21848.1    AKJ21854.1    AKJ21860.1    AKJ21866.1    AKJ21872.1    AKJ21878.1    AKJ21884.1    AKJ21890.1    AKJ21896.1    AKJ21902.1    AKJ21908.1    AKJ21914.1    AKJ21920.1    AKJ21926.1    AKJ21932.1    AKJ21938.1    AKJ21944.1    AKJ21950.1    AKJ21956.1    AKJ21962.1    AKJ21968.1    AKJ21974.1    AKJ21980.1    AKJ21986.1    AKJ21992.1    AKJ21998.1    AKJ22004.1    AKJ22010.1    AKJ22016.1    AKJ22022.1    AKJ22028.1    AKJ22034.1    AKJ22040.1    AKJ22046.1    AKJ22052.1    AKJ22058.1    AKJ22064.1    AKJ22076.1    AKJ22082.1    AKJ22088.1    AKJ22100.1    AKJ22106.1    AKJ22112.1    AKJ22124.1    AKJ22130.1    AKJ22136.1    AKJ22142.1    AKJ22148.1    AKJ22154.1    AKJ22178.1    AKJ22184.1    AKJ22190.1    AKJ22196.1    AKJ22202.1    AKJ22214.1    AKO63240.1    AKP80592.1    AKP80599.1    AKP80606.1    AKP80613.1    AKP80620.1    AKP80627.1    AKP80634.1    AKR05181.1    AKR05187.1    AKS50225.1    AKS50230.1    AKS50235.1    AKS50241.1    AKS50247.1    AKS50252.1    AKS50257.1    ALM09367.1    ALM09373.1    ALM09379.1    ALM09385.1    ALM31935.1    ALM31941.1    ALM31947.1    ALP06213.1    ALR74760.1    ALS35477.1    ALU34115.1    AMC39587.1    AMD11121.1    AMD11127.1    AMR59404.1    AMR60836.1    AMS37103.1    AMS37108.1    ANC68210.1    AND65696.1    AND65697.1    AND65699.1    AND65700.1    AND65702.1    AND65703.1    AND65707.1    AND65708.1    AND65709.1    AND76939.1    ANI85731.1    ANI85737.1    ANI85743.1    ANI85749.1    ANI85755.1    ANI85761.1    ANI85767.1    ANI85773.1    ANI85779.1    ANI85785.1    ANI85791.1    ANI85797.1    ANI85803.1    ANI85809.1    ANI85815.1    ANM27773.1    AOS89614.1    APD70937.1    APG31001.1    APG31008.1    APH81309.1    APR64498.1    APX42110.1    APX42116.1    AQK38171.1    AQT33897.1    AQW35016.1    AQY61722.1    ARJ54149.1    ARM53664.1    ARM53665.1    ARM53668.1    ARM53669.1    ARM53670.1    ARM53671.1    ARM53672.1    ARM53673.1    ARM53675.1    ARM53677.1    ARM53678.1    ARM53681.1    ARM53682.1    ARM53684.1    ARM53686.1    ARM53687.1    ARM53689.1    ARM53690.1    ARM53691.1    ARM53692.1    ARM53693.1    ARM53696.1    ARM53697.1    ARM53698.1    ARM53699.1    ARM53700.1    ARM53701.1    ARM65487.1    ARM65493.1    ARQ03272.1    ASA40094.1    ASA40100.1    ASA40106.1    ASA40112.1    ASA69727.1    ASB30084.1    ASK39746.1    ASK39753.1    ATJ03685.1    ATJ03686.1    ATJ03687.1    ATJ03688.1    ATJ03689.1    ATJ03690.1    ATJ03693.1    ATJ03694.1    ATY72309.1    ATY72315.1    AUJ79487.1    AUV64575.1    AVI57399.1    AVI57406.1    AVK78144.1    AVK78150.1    AVU05392.1    AVU05399.1    AVU05413.1    AVU05420.1    AVU05427.1    AVU05434.1    AVU05448.1    AVU05455.1    AVU05469.1    AVU05476.1    AVU05483.1    AVU05490.1    AVU05497.1    AVU05504.1    AWM11471.1    AWM11489.1    AWM11495.1    AWQ28491.1    AWV57051.1    AYP73648.1    AYU70938.1    AZL47195.1    AZL47219.1    AZP03046.1    BAR92901.1    BAT31609.1    BAT33116.1    BAT33122.1    BAT33128.1    BAT33134.1    BAT33140.1    BAT33146.1    BAT33152.1    BAT33158.1    BAT33164.1    BAT33170.1    BAT33188.1    BAT33194.1    BAT33200.1    BAT33206.1    BAT33212.1    BAT33218.1    BAT33224.1    BAT33230.1    BAT33236.1    BAT33242.1    BAT33248.1    BAT33254.1    BAT33260.1    BAT33266.1    BAT33272.1    BAT33278.1    BAT33284.1    BAT33290.1    BAT33296.1    BAT33302.1    BAT33308.1    BAT33314.1    BAT33320.1    BAT33326.1    BAT33332.1    BAT33338.1    CDW77216.1    QAY31034.1    QBA57555.1    QBO24654.1    QBO24672.1    QCB65303.1    QCC26598.1    QCQ19801.1    QCQ19807.1    QCQ19819.1    QCQ19831.1    QCQ19843.1    QCQ19855.1    QCQ19861.1    QCQ19867.1    QCQ19873.1    QCQ19885.1    QCQ19927.1    QDZ36665.1    QDZ36671.1    QED58404.1    QEE80062.1    QEE80068.1    QFE32181.1    QFG01697.1    QFG71728.1    QFG71729.1    QFG71730.1    QFG71736.1    SNQ27890.1    SNQ27896.1    SNQ27902.1    SNQ27910.1    SNQ27915.1    SNQ27920.1    SNQ27927.1    SNQ27936.1    SNQ27937.1    SNQ27944.1    SNQ27952.1    SNQ27958.1    SNQ27964.1    SNQ27970.1    SNQ27977.1    SNQ27982.1    SNQ27988.1    SNQ27994.1    SNQ28000.1    SNQ28014.1    SNQ28019.1    SNQ28025.1    SNQ28035.1    SNQ28041.1    SNQ28048.1    SNQ28054.1    SNQ28060.1    SNQ28067.1    SNQ28073.1    SNQ28079.1    SNQ28085.1    SNQ28091.1    SNT95656.1    SNT95662.1    SNT95668.1    SNT95674.1    SNT95680.1    KJ857390    AJD09513.1    FJ687453    ACV81753.1    MK796238    QCW07224.1    KR818832    ALL27305.1    FJ687454    ACV81754.1    JN089732    AER39413.1    KJ857379    AJD09502.1    LT906581    SNW64193.1    KJ158152    AHG97561.1    KP403954    ALJ52507.1    MH004415    MH006961    MH006964    AVU05364.1    AVU05441.1    AVU05462.1    KY649107    MF807952    MG546689    MH061337    MH061343    MH726370    MK656468    MK656469    AUV64202.1    AXK47361.1    AYP73642.1    AZL47201.1    AZL47237.1    QCQ19849.1    QFG71731.1    QFG71732.1    KX852339    KX852343    KX852344    KX852345    KX852346    KX852352    ASK39745.1    ASK39749.1    ASK39750.1    ASK39751.1    ASK39752.1    ASK39758.1    MH004413    MH004414    AVU05350.1    AVU05357.1    FJ687460    ACV81760.1    JN400905    AEW24883.1    KT800001    AMP46779.1    EU033965    EU302820    JN089724    JN089726    JN089728    JN089734    JN089735    JN173337    JN173339    JQ023162    KC836507    ABU50836.1    ABY20978.1    AER39405.1    AER39407.1    AER39409.1    AER39415.1    AER39416.1    AET71236.1    AET71238.1    AFE85972.1    AGV05244.1    KC294270    AFZ85190.1    KY929406    MH726379    ART85709.1    QCQ19903.1    MK841494    MK841495    QED40656.1    QED40662.1    KU893870    KU893871    KU893872    KX580958    APX42122.1    APX42128.1    APX42134.1    APX42294.1    MH052681    MH052682    MH052685    MH891584    MH891585    MH891586    MH891587    MH891588    MH891590    AWM11459.1    AWM11465.1    AWM11483.1    QCO95395.1    QCO95401.1    QCO95407.1    QCO95413.1    QCO95419.1    QCO95430.1    EU581711    ACB87498.1    JN089742    MH726405    MK644604    AER39423.1    QCQ20059.1    QFG01709.1    MH726364    QCQ19813.1    MH726375    QCQ19879.1    JF690777    JN400910    AEE38480.1    AEQ29503.1    JX869043    AFZ45983.1    FJ687458    ACV81758.1    KY619828    ATJ03683.1    MG373543    AUD08950.1    KJ645674    AID56904.1    MK288006    MK656475    QAR17952.1    QFG71738.1    JN089727    JN089733    AER39408.1    AER39414.1    FJ687459    FJ687461    ACV81759.1    ACV81761.1    JN083786    JX261936    AER35138.1    AFR54329.1    MH004416    MH004421    MH243319    AVU05371.1    AVU05406.1    QBA57561.1    MK559454    MK559455    QDY92472.1    QDY92478.1    KY198265    ARM53666.1    KJ777678    AIJ01344.1    KC836506    KC836509    KC836510    KC836513    KR265820    MH004412    LC063820    LC063821    AGV05243.1    AGV05246.1    AGV05247.1    AGV05250.1    AKJ22070.1    AVU05343.1    BAT33176.1    BAT33182.1    KJ001738    AHK25076.1    KM609208    AJP67429.1    KU646831    AMZ01559.1    JF690778    AEE38481.1    JN400902    AEW24880.1    MG546688    AYP73637.1    KY198293    ARM53694.1    JN089743    JN173340    JN173341    JN173342    JN173343    AER39424.1    AET71239.1    AET71240.1    AET71241.1    AET71242.1    KJ646606    AIC82413.1    JN089730    KJ001737    AER39411.1    AHK25075.1    MH726406    QCQ20065.1    KY619837    ATJ03692.1    JX501326    AFV59248.1    EU542418    ACA81419.1    KJ526112    AJD07386.1    KJ857381    AJD09504.1    JN400901    AEW24879.1    KJ857386    KJ857396    KJ857397    AJD09509.1    AJD09519.1    AJD09520.1    KJ646592    AIC82399.1    MK606369    QCB65309.1    MK032691    QBO24666.1    KJ857380    AJD09503.1    KX852342    ASK39748.1    KT021232    ALM09391.1    KX852348    ASK39754.1    KJ857385    MF807951    AJD09508.1    AXK47355.1    MH726377    MH726378    QCQ19891.1    QCQ19897.1   
Proteomes
UP000008159    UP000274194    UP000276154    UP000278337    UP000281783    UP000100223    + More
UP000146251    UP000149315    UP000111801    UP000152961    UP000267509    UP000096075    UP000134644    UP000180353    UP000180354    UP000156820    UP000171486    UP000095955    UP000122353    UP000100611    UP000102013    UP000107040    UP000112802    UP000114638    UP000128510    UP000133882    UP000137179    UP000150256    UP000150836    UP000150912    UP000157500    UP000172504    UP000138211    UP000096014    UP000096231    UP000096250    UP000096695    UP000096781    UP000096896    UP000096940    UP000097091    UP000097201    UP000097739    UP000097949    UP000098101    UP000098326    UP000099262    UP000099939    UP000100204    UP000100263    UP000101279    UP000101663    UP000101883    UP000102377    UP000102422    UP000102715    UP000103144    UP000103187    UP000103230    UP000103525    UP000103873    UP000104212    UP000104329    UP000104528    UP000104629    UP000104743    UP000105572    UP000105717    UP000106279    UP000106554    UP000106837    UP000107011    UP000107079    UP000107726    UP000107825    UP000107890    UP000108853    UP000108901    UP000108998    UP000109171    UP000109281    UP000109462    UP000109730    UP000109784    UP000109960    UP000110005    UP000110085    UP000110170    UP000110553    UP000110779    UP000110780    UP000111048    UP000111596    UP000111997    UP000112445    UP000112725    UP000113629    UP000113720    UP000114176    UP000114423    UP000114426    UP000114579    UP000114584    UP000114886    UP000115696    UP000115820    UP000115913    UP000116623    UP000116900    UP000117024    UP000117314    UP000117463    UP000117465    UP000117616    UP000118055    UP000118621    UP000118902    UP000119410    UP000119498    UP000119763    UP000119870    UP000120045    UP000120106    UP000120197    UP000120281    UP000120524    UP000120529    UP000120737    UP000121150    UP000121532    UP000121581    UP000122106    UP000122204    UP000122310    UP000122774    UP000122785    UP000122852    UP000123046    UP000123112    UP000123161    UP000123657    UP000124209    UP000124555    UP000124684    UP000124742    UP000124784    UP000125425    UP000125691    UP000125786    UP000126216    UP000127334    UP000127765    UP000127953    UP000127975    UP000128202    UP000128363    UP000128879    UP000128894    UP000129574    UP000130338    UP000130438    UP000130717    UP000131126    UP000131296    UP000131950    UP000132054    UP000132225    UP000132509    UP000132713    UP000132791    UP000132921    UP000133030    UP000133192    UP000133398    UP000133657    UP000133992    UP000134050    UP000134226    UP000134395    UP000134741    UP000134981    UP000135037    UP000135153    UP000135367    UP000135502    UP000135609    UP000135702    UP000135713    UP000135804    UP000135840    UP000135878    UP000135912    UP000136286    UP000136506    UP000137076    UP000137135    UP000137642    UP000138117    UP000138881    UP000139036    UP000139218    UP000140002    UP000140886    UP000141497    UP000141838    UP000141930    UP000141975    UP000142054    UP000142467    UP000142735    UP000142872    UP000142994    UP000143145    UP000143266    UP000145028    UP000145713    UP000145872    UP000145986    UP000146202    UP000146214    UP000146856    UP000147164    UP000147669    UP000148016    UP000148048    UP000148065    UP000148263    UP000148798    UP000148839    UP000148893    UP000149058    UP000149986    UP000150601    UP000151163    UP000151206    UP000151262    UP000153081    UP000153092    UP000153127    UP000153418    UP000153562    UP000153741    UP000153753    UP000154143    UP000154382    UP000154578    UP000154704    UP000154723    UP000154811    UP000155002    UP000155212    UP000155241    UP000155578    UP000155842    UP000156035    UP000156412    UP000158257    UP000158262    UP000158343    UP000158401    UP000158498    UP000158624    UP000158853    UP000159218    UP000160024    UP000160123    UP000160238    UP000160819    UP000161341    UP000161506    UP000162314    UP000163006    UP000163267    UP000163543    UP000163624    UP000163819    UP000164459    UP000164654    UP000165932    UP000166175    UP000166734    UP000167803    UP000168320    UP000168469    UP000168944    UP000169024    UP000169265    UP000169341    UP000169811    UP000169922    UP000169926    UP000170794    UP000170945    UP000170995    UP000171222    UP000171736    UP000171879    UP000172207    UP000172961    UP000173775    UP000174062    UP000174684    UP000174771    UP000175484    UP000267271    UP000267306    UP000267609    UP000268721    UP000269355    UP000269867    UP000270191    UP000270497    UP000270545    UP000271078    UP000271135    UP000271448    UP000272790    UP000273819    UP000274124    UP000274353    UP000274834    UP000274992    UP000275549    UP000275656    UP000275831    UP000276052    UP000276298    UP000276964    UP000277020    UP000277354    UP000277927    UP000278039    UP000278495    UP000278554    UP000278990    UP000279022    UP000280517    UP000280596    UP000281047    UP000281631    UP000281935    UP000137505    UP000269222    UP000149796    UP000122996    UP000126260    UP000112678    UP000117333    UP000180355    UP000101715    UP000108525    UP000111853    UP000124473    UP000112744    UP000141943   
Pfam
PF01635   Corona_M
Interpro
IPR002574   Corona_M
IPR042551   ALPHA_CORONA_M
PDB
3Q2V     E-value=2.20583,     Score=68

Ontologies

KEGG

Subcellular Location

From MSLVP
Host nucleus. Host cytoplasm.
From Uniprot
Virion membrane   Largely embedded in the lipid bilayer.   With evidence from 1 publications.
Host Golgi apparatus membrane   Largely embedded in the lipid bilayer.   With evidence from 1 publications.

Topology

Length:
226
Number of predicted TMHs:
3
Exp number of AAs in TMHs:
79.80633
Exp number, first 60 AAs:
36.4576
Total prob of N-in:
0.03837
POSSIBLE N-term signal
sequence
outside
1  -  19
TMhelix
20  -  38
inside
39  -  42
TMhelix
43  -  65
outside
66  -  74
TMhelix
75  -  97
inside
98  -  226
 
 

Population Genetic Test Statistics

Pi
0.3425458
Theta
0.4162618
Tajima's D
-0.685422
CLR
10.999474
Interpretation
No evidence of Selection

Genomic alignment in the CDS region

 
 

Multiple alignment of Orthologues

 
 

Gene Tree

 
 

Orthologous in Strains

Strain Availability Status Gene
CHINA_HS_2019_MN908947    
CHINA_AVIAN_2008_NC_016995    
CHINA_AVIAN_2007_NC_016991    
CHINA_MURINE_2015_NC_035191    
CANADA_AVIAN_2007_NC_010800    
USA_PIG_2000_NC_038861    
CHINA_AVIAN_2007_NC_011549    
ITALY_PIG_2009_NC_028806    
GERMANY_PIG_2012_LT545990    
CHINA_AVIAN_2007_NC_016992    
CHINA_BAT_2005_NC_009657 Protein
YP_001351687.1
CANADA_HS_2003_NC_004718    
CHINA_BAT_2014_NC_030886    
CHINA_BAT_2005_NC_018871    
USA_MURINE_2009_NC_012936    
CHINA_RABBIT_2006_NC_017083    
UK_PIG_2000_NC_003436 Protein
NP_598313.1
ROMANIA_PIG_2015_LT898435 Protein
SNQ28048.1
ROMANIA_PIG_2015_LT898436 Protein
SNQ28019.1
GERMANY_PIG_2015_LT898444 Protein
SNQ28079.1
GERMANY_PIG_2015_LT898414 Protein
SNQ27915.1
GERMANY_PIG_2015_LT898439 Protein
SNQ28041.1
GERMANY_PIG_2015_LT898413 Protein
SNQ27902.1
GERMANY_PIG_2015_LT898412 Protein
SNQ27958.1
GERMANY_PIG_2015_LT898411 Protein
SNQ27920.1
GERMANY_PIG_2015_LT898416 Protein
SNQ27927.1
GERMANY_PIG_2015_LT898443 Protein
SNQ28060.1
GERMANY_PIG_2015_LT898420 Protein
SNQ27952.1
GERMANY_PIG_2015_LT898408 Protein
SNQ27890.1
GERMANY_PIG_2015_LT898423 Protein
SNQ27937.1
GERMANY_PIG_2015_LT898432 Protein
SNQ27970.1
GERMANY_PIG_2015_LT898409 Protein
SNQ27944.1
GERMANY_PIG_2015_LT898425 Protein
SNQ27977.1
GERMANY_PIG_2015_LT898446 Protein
SNQ28067.1
GERMANY_PIG_2014_LT898438 Protein
SNQ28025.1
GERMANY_PIG_2014_LT898440 Protein
SNQ28035.1
GERMANY_PIG_2014_LT900501 Protein
SNT95680.1
GERMANY_PIG_2014_LT898427 Protein
SNQ27988.1
GERMANY_PIG_2014_LT898415 Protein
SNQ27896.1
GERMANY_PIG_2014_LT898421 Protein
SNQ27910.1
GERMANY_PIG_2014_LT898431 Protein
SNQ27982.1
GERMANY_PIG_2014_LT898410 Protein
SNQ27964.1
GERMANY_PIG_2014_LT900498 Protein
SNT95656.1
GERMANY_PIG_2014_LT898430 Protein
SNQ27994.1
GERMANY_PIG_1978_LT897799 Protein
SNC44848.1
GERMANY_PIG_2014_LT898447 Protein
SNQ28091.1
GERMANY_PIG_2014_LT898426 Protein
SNQ28014.1
GERMANY_PIG_2014_LT898417 Protein
SNQ28085.1
GERMANY_PIG_2014_LT900500 Protein
SNT95668.1
GERMANY_PIG_2014_LT898445 Protein
SNQ28073.1
AUSTRIA_PIG_2015_LT898418 Protein
SNQ27936.1
AUSTRIA_PIG_2015_LT898441 Protein
SNQ28054.1
AUSTRIA_PIG_2015_LT898433 Protein
SNQ28000.1
AUSTRIA_PIG_2015_LT900502 Protein
SNT95674.1
GERMANY_PIG_2015_LT900499 Protein
SNT95662.1
BELGIUM_PIG_1980_LT906620 Protein
SNX30667.1
BELGIUM_PIG_1977_LT905450 Protein
SNU46339.1
SWITZERLAND_PIG_2003_LT905451 Protein
SNU46345.1
BELGIUM_PIG_1978_LT906581 Protein
SNW64193.1
UK_PIG_1987_LT906582 Protein
SNW64187.1
CHINA_PIG_2009_NC_016990    
CHINA_PIG_2010_NC_039208    
KENYA_BAT_2010_KY073745    
KENYA_BAT_2010_NC_032107    
CHINA_AVIAN_2007_NC_016994    
EUROPE_MURINE_2004_AY700211    
CHINA_AVIAN_2007_NC_011550    
USA_MURINE_1997_NC_001846    
USA_MURINE_1998_NC_023760    
MID_EAST_HS_2012_NC_019843    
CHINA_AVIAN_2007_NC_016993    
CHINA_MURINE_2013_NC_032730    
USA_HS_2004_AY585228    
NETHERLAND_HS_2004_NC_005831    
CHINA_HS_2004_NC_006577    
EUROPE_HS_2000_NC_002645    
NETHERLAND_FERRET_2010_NC_030292    
JAPAN_FERRET_2013_LC119077    
USA_FELINE_2005_NC_002306    
CHINA_MURINE_2011_NC_034972    
CHINA_AVIAN_2007_NC_016996    
ARABIA_CAMEL_2015_NC_028752    
CHINA_AVIAN_2007_NC_011547    
CHINA_BAT_2012_NC_028824    
CHINA_BAT_2013_NC_028814    
CHINA_BAT_2013_NC_028833    
CHINA_BAT_2011_NC_028811    
USA_BOVIN_2001_NC_003045    
CHINA_MURINE_2012_NC_026011    
GERMANY_ERINACEINAE_2012_NC_022643    
GERMANY_ERINACEINAE_2012_NC_039207    
UK_HS_2012_NC_038294    
AMERICA_WHALE_2007_NC_010646    
CHINA_BAT_2013_NC_025217    
UGANDA_BAT_2013_NC_034440    
CHINA_BAT_2006_NC_009021    
CHINA_BAT_2008_NC_010438    
CHINA_BAT_2006_NC_009020    
CHINA_BAT_2006_NC_009019    
CHINA_BAT_2006_NC_009988    
USA_BAT_2006_NC_022103 Protein
YP_008439205.1
BULGARIA_BAT_2008_NC_014470    
CHINA_BAT_2008_NC_010437    
USA_AVIAN_2004_NC_001451    
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